# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2z6cA	129	2.71e-18		
2gj3A	120	3.14e-18		
3lyxA	124	3.17e-18		
2v0uA	146	1.17e-17		
3bwlA	126	4.03e-16		
2pr5A	132	4.90e-16		
1n9lA	109	5.31e-16	d.110.3.6	85468
3ewkA	227	5.83e-16		
1ew0A	130	7.31e-16	d.110.3.2	40905
3f1pA	117	2.04e-15		
3h9wA	115	2.07e-15		
1x0oA	119	2.93e-15		
3eehA	125	3.04e-15		
3luqA	114	3.85e-15		
2b02A	119	8.65e-15		
2vv6A	119	1.57e-14		
1xj4A	119	2.44e-14	d.110.3.2	122027
1bywA	110	1.21e-13	d.110.3.6	40912
3f1pB	121	1.56e-13		
3d72A	149	2.17e-13		
2pd8A	149	3.62e-13		
2pdrA	149	3.74e-13		
3gdiA	309	4.19e-13		
1v9yA	167	8.19e-13	d.110.3.2	108454
3fc7A	125	2.48e-12		
3icyA	118	2.81e-12		
2r78A	117	5.17e-11		
3caxA	369	1.66e-10		
3b33A	115	8.02e-08		
2jheA	190	2.00e-05		
2qkpA	151	6.28e-05		
3a0sA	96	0.000114		
3a0vA	96	0.000339		
3fg8A	118	0.001946		
2vlgA	111	0.004996		
3crkA	407	0.008642		
1nwzA	125	0.009778	d.110.3.1	86370
2o9cA	342	0.01102	d.110.2.1,d.110.3.9	148684,148685
1mzuA	129	0.01183	d.110.3.1	79714
2veaA	520	0.02107	d.110.2.1,d.110.2.4,d.110.3.9	153022,153023,153024
2oolA	337	0.03900	d.110.2.1,d.110.3.9	148932,148933
1ztuA	341	0.07912	d.110.2.1,d.110.3.9	146024,146025
3fosA	214	0.4420		
1ykdA	398	0.4601		
3c8cA	240	0.5930		
2p7jA	287	0.7023	d.110.6.2,d.110.6.2	149287,149288
2qhkA	174	0.9270		
3ighX	486	1.260		
1mc0A	368	8.036	d.110.2.1,d.110.2.1	78937,78938
3by9A	260	8.953		
2isnA	364	13.80		
2i2cA	272	15.60		
1p0zA	131	16.98	d.110.6.1	93882
1l1oC	181	19.80	b.40.4.3	73480
3ghjA	141	22.52		
2zhpA	124	26.47		
2zpmA	91	26.77		
1oj5A	132	30.08	d.110.3.8	93087
3id2A	90	31.44		
3id4A	93	33.40		
1pfvA	551	38.75	a.27.1.1,c.26.1.1,g.41.1.1	94660,94661,94662
3grdA	134	44.26		
2g2cA	167	45.96	c.57.1.1	134535
1hyhA	309	47.19	c.2.1.5,d.162.1.1	30150,42117
3i18A	100	51.89		
2j8mA	172	54.27		
3lulA	272	57.12		
1nwwA	149	58.84	d.17.4.8	86306
1ywfA	296	58.99	c.45.1.5	124144
3i1eA	90	61.63		
2dyuA	334	66.69		
2kjzA	144	66.83		
2zc3A	168	67.02		
3by8A	142	68.12	d.110.6.1	155722
3g0kA	148	68.32		
3bxoA	239	69.48		
1cb0A	283	71.90	c.56.2.1	33790
2eg2A	112	73.49		
3id3A	89	75.57		
3exnA	160	75.85		
1whi	122	76.00		
1whiA	122	76.88	b.39.1.1	24810
1dnlA	199	78.35	b.45.1.1	25753
2p9mA	138	78.59		
2w1rA	123	79.41		
2z2mA	168	79.75		
3gwrA	144	79.96		
1ci0A	228	81.97	b.45.1.1	25750
3ff2A	117	83.93		
3fgyA	135	84.46		
1lldA	319	85.01	c.2.1.5,d.162.1.1	30177,42144
3cswA	285	85.68		
1kllA	130	87.15	d.32.1.2	72720
1vqoK	132	87.79	b.39.1.1	120372