# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2z6cA	129	1.73e-17		
3lyxA	124	1.99e-17		
2gj3A	120	2.31e-17		
2v0uA	146	1.32e-16		
1n9lA	109	1.89e-15	d.110.3.6	85468
3f1pA	117	2.72e-15		
3bwlA	126	2.81e-15		
1ew0A	130	2.92e-15	d.110.3.2	40905
3h9wA	115	6.10e-15		
3ewkA	227	6.45e-15		
2pr5A	132	7.43e-15		
1x0oA	119	8.55e-15		
3eehA	125	1.03e-14		
2b02A	119	2.19e-14		
3luqA	114	2.84e-14		
2vv6A	119	3.82e-14		
1xj4A	119	6.16e-14	d.110.3.2	122027
1bywA	110	2.98e-13	d.110.3.6	40912
3f1pB	121	3.79e-13		
3gdiA	309	4.48e-13		
3d72A	149	1.02e-12		
2pd8A	149	1.27e-12		
2pdrA	149	1.81e-12		
1v9yA	167	2.19e-12	d.110.3.2	108454
3fc7A	125	9.91e-12		
3icyA	118	1.22e-11		
2r78A	117	1.82e-10		
3caxA	369	3.51e-10		
3b33A	115	1.58e-07		
2jheA	190	5.20e-05		
2qkpA	151	6.45e-05		
3a0sA	96	0.000177		
3a0vA	96	0.000389		
3fg8A	118	0.002251		
2vlgA	111	0.003136		
1nwzA	125	0.01574	d.110.3.1	86370
1mzuA	129	0.02819	d.110.3.1	79714
3crkA	407	0.02865		
2o9cA	342	0.04118	d.110.2.1,d.110.3.9	148684,148685
2veaA	520	0.06537	d.110.2.1,d.110.2.4,d.110.3.9	153022,153023,153024
2oolA	337	0.08197	d.110.2.1,d.110.3.9	148932,148933
3fosA	214	0.1375		
2p7jA	287	0.2673	d.110.6.2,d.110.6.2	149287,149288
1ztuA	341	0.3205	d.110.2.1,d.110.3.9	146024,146025
3c8cA	240	0.4444		
2qhkA	174	0.5495		
1ykdA	398	0.7561		
3ighX	486	1.075		
1l1oC	181	7.195	b.40.4.3	73480
3by9A	260	7.511		
1p0zA	131	7.675	d.110.6.1	93882
2zpmA	91	13.28		
1mc0A	368	13.83	d.110.2.1,d.110.2.1	78937,78938
2isnA	364	17.77		
2i2cA	272	19.12		
3grdA	134	19.25		
3id4A	93	21.23		
1oj5A	132	25.49	d.110.3.8	93087
3id2A	90	28.40		
3by8A	142	30.21	d.110.6.1	155722
2zc3A	168	32.86		
2z2mA	168	39.18		
3ghjA	141	44.14		
1nwwA	149	45.84	d.17.4.8	86306
3i18A	100	47.61		
2zhpA	124	48.02		
2w1rA	123	48.76		
2jv2A	83	49.09		
1tdzA	272	52.76	a.156.1.2,b.113.1.1,g.39.1.8	106787,106788,106789
1ywfA	296	53.84	c.45.1.5	124144
2g2cA	167	56.84	c.57.1.1	134535
3lulA	272	63.49		
2dyuA	334	64.28		
3id3A	89	69.51		
2hjeA	221	69.97	d.110.6.3	147294
2kjkA	100	70.66		
3ff2A	117	72.65		
1pfvA	551	75.29	a.27.1.1,c.26.1.1,g.41.1.1	94660,94661,94662
2zgiA	246	76.16		
3i1eA	90	76.51		
1uf5A	303	78.94	d.160.1.2	107808
1s5aA	150	79.59	d.17.4.10	98525
1hyhA	309	86.11	c.2.1.5,d.162.1.1	30150,42117
1zhhB	242	86.52	d.110.6.3	144740
3id1A	95	87.08