# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3lyxA 124 1.92e-21 2gj3A 120 4.95e-21 2z6cA 129 6.02e-21 2v0uA 146 3.15e-20 1n9lA 109 9.36e-19 d.110.3.6 85468 3f1pA 117 1.03e-18 1ew0A 130 1.46e-18 d.110.3.2 40905 1x0oA 119 1.66e-18 2pr5A 132 2.39e-18 3bwlA 126 3.09e-18 3h9wA 115 3.49e-18 3ewkA 227 5.06e-18 3eehA 125 7.43e-18 2b02A 119 1.19e-17 2vv6A 119 3.62e-17 3luqA 114 3.64e-17 1xj4A 119 7.73e-17 d.110.3.2 122027 3gdiA 309 1.33e-16 1bywA 110 2.68e-16 d.110.3.6 40912 3f1pB 121 3.42e-16 3d72A 149 1.38e-15 2pd8A 149 2.52e-15 2pdrA 149 3.17e-15 1v9yA 167 3.64e-15 d.110.3.2 108454 3fc7A 125 4.01e-14 3icyA 118 1.01e-13 2r78A 117 2.92e-12 3caxA 369 3.58e-12 3b33A 115 9.08e-10 2jheA 190 1.12e-06 2qkpA 151 9.41e-06 3a0sA 96 2.17e-05 3a0vA 96 4.84e-05 3fg8A 118 5.61e-05 2vlgA 111 0.000236 2o9cA 342 0.000455 d.110.2.1,d.110.3.9 148684,148685 2oolA 337 0.000554 d.110.2.1,d.110.3.9 148932,148933 1nwzA 125 0.000901 d.110.3.1 86370 1mzuA 129 0.001331 d.110.3.1 79714 2veaA 520 0.003063 d.110.2.1,d.110.2.4,d.110.3.9 153022,153023,153024 3crkA 407 0.004226 1ztuA 341 0.008711 d.110.2.1,d.110.3.9 146024,146025 3fosA 214 0.02316 2p7jA 287 0.03820 d.110.6.2,d.110.6.2 149287,149288 2qhkA 174 0.1308 3c8cA 240 0.1370 1ykdA 398 0.4134 3ighX 486 0.5823 3by9A 260 1.334 1mc0A 368 2.680 d.110.2.1,d.110.2.1 78937,78938 2dyuA 334 6.768 3lm2A 226 7.991 2isnA 364 9.028 3bxoA 239 9.480 2zc3A 168 10.64 1hyhA 309 12.67 c.2.1.5,d.162.1.1 30150,42117 2z2mA 168 15.16 1oj5A 132 15.37 d.110.3.8 93087 1l1oC 181 16.70 b.40.4.3 73480 2w1rA 123 16.85 2vdjA 301 17.84 1lldA 319 18.04 c.2.1.5,d.162.1.1 30177,42144 2zpmA 91 18.32 3grdA 134 18.89 3fgyA 135 19.11 3icjA 534 19.31 1vqoK 132 19.56 b.39.1.1 120372 2zzdC 243 20.59 1nwwA 149 21.63 d.17.4.8 86306 1aihA 170 21.70 d.163.1.1 42149 1pfvA 551 21.84 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 2egxA 269 24.39 2kjkA 100 24.56 1frb 315 24.83 3erpA 353 26.05 1whiA 122 26.71 b.39.1.1 24810 1whi 122 26.82 1ci0A 228 27.80 b.45.1.1 25750 3ff2A 117 28.02 2o1xA 629 28.11 1p0zA 131 28.62 d.110.6.1 93882 2o1sA 621 29.27 3l48A 94 31.18 1dnlA 199 31.48 b.45.1.1 25753 3iutA 221 32.01 3hkxA 283 32.14 1j96A 323 34.39 c.1.7.1 71616 2v9yA 334 38.16 2x7nC 132 38.37 3by8A 142 40.81 d.110.6.1 155722 1exbA 332 41.17 c.1.7.1 28666 3ec9A 140 44.12 d.17.4.10 158092 3cg7A 308 44.88 3id4A 93 44.89 3id3A 89 46.60 3i1eA 90 46.87 3ebtA 132 47.06 d.17.4.9 158086 3bneA 839 48.54 a.119.1.1,b.12.1.1 155436,155437 3g0kA 148 49.47 2cz1A 206 51.14 d.149.1.1 131033 1guzA 310 52.42 c.2.1.5,d.162.1.1 65586,65587 2hjeA 221 52.84 d.110.6.3 147294 2g2cA 167 53.28 c.57.1.1 134535 1zhhB 242 54.15 d.110.6.3 144740 1l5oA 356 54.88 c.39.1.1 77711 1jg5A 83 56.65 d.205.1.1 66666 1zsxA 347 56.69 3id2A 90 56.96 3ffhA 363 61.47 2p9mA 138 61.79 1rgzA 363 62.48 e.3.1.1 97457 1gg3A 279 62.79 a.11.2.1,b.55.1.5,d.15.1.4 16372,27007,37615 1s5aA 150 63.09 d.17.4.10 98525 3eauA 327 65.39 c.1.7.1 158080 1ty9A 222 68.19 b.45.1.1 112827 2i2cA 272 69.13 2w1vA 276 69.70 2qdyA 207 71.31 d.149.1.1 150674 2dxcC 243 73.58 3f7jA 276 74.02 2vzwA 149 74.03 3buvA 326 74.05 1qgdA 662 74.57 c.36.1.6,c.36.1.10,c.48.1.1 88367,88368,88369 2eg2A 112 75.19 3i18A 100 76.09 2wzmA 283 76.86 3b9jC 763 77.74 d.41.1.1,d.133.1.1 155004,155005 3iwiA 361 78.90 1us0A 316 79.63 c.1.7.1 99850 2yvyA 278 85.65 2zyjA 397 86.23 3h51A 156 88.30