# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gj3A 120 6.00e-19 3lyxA 124 7.05e-19 2z6cA 129 8.01e-19 2v0uA 146 2.59e-18 3f1pA 117 1.57e-16 3bwlA 126 1.67e-16 1ew0A 130 1.69e-16 d.110.3.2 40905 2pr5A 132 1.93e-16 3ewkA 227 2.32e-16 1n9lA 109 3.77e-16 d.110.3.6 85468 3h9wA 115 4.11e-16 1x0oA 119 4.32e-16 3eehA 125 9.40e-16 3luqA 114 1.29e-15 2b02A 119 2.42e-15 2vv6A 119 4.47e-15 1xj4A 119 6.28e-15 d.110.3.2 122027 1bywA 110 2.09e-14 d.110.3.6 40912 3d72A 149 7.02e-14 3f1pB 121 1.14e-13 2pdrA 149 1.34e-13 2pd8A 149 1.50e-13 3gdiA 309 2.79e-13 1v9yA 167 3.16e-13 d.110.3.2 108454 3icyA 118 8.50e-13 3fc7A 125 1.22e-12 2r78A 117 1.40e-11 3caxA 369 5.49e-11 3b33A 115 1.89e-08 2jheA 190 2.43e-05 2qkpA 151 7.08e-05 3crkA 407 0.000216 3a0sA 96 0.000311 3a0vA 96 0.000888 3fg8A 118 0.001647 2o9cA 342 0.004256 d.110.2.1,d.110.3.9 148684,148685 2vlgA 111 0.005768 2veaA 520 0.01784 d.110.2.1,d.110.2.4,d.110.3.9 153022,153023,153024 2oolA 337 0.02179 d.110.2.1,d.110.3.9 148932,148933 1ztuA 341 0.03066 d.110.2.1,d.110.3.9 146024,146025 1nwzA 125 0.03362 d.110.3.1 86370 1mzuA 129 0.03706 d.110.3.1 79714 2p7jA 287 0.08515 d.110.6.2,d.110.6.2 149287,149288 3fosA 214 0.1003 1ykdA 398 0.1683 3c8cA 240 0.8334 2qhkA 174 0.8807 3ighX 486 1.426 1mc0A 368 1.871 d.110.2.1,d.110.2.1 78937,78938 3by9A 260 3.456 2isnA 364 9.907 3grdA 134 14.24 1p0zA 131 15.31 d.110.6.1 93882 2zhpA 124 16.82 1nwwA 149 17.35 d.17.4.8 86306 3fgyA 135 18.72 2i2cA 272 20.49 2w1rA 123 20.61 2eg2A 112 21.31 3id4A 93 23.63 3bzqA 114 24.55 2zpmA 91 29.88 3id2A 90 30.40 1hyhA 309 31.65 c.2.1.5,d.162.1.1 30150,42117 1s5aA 150 31.99 d.17.4.10 98525 2g2cA 167 32.69 c.57.1.1 134535 2rgtA 169 36.91 3bxoA 239 37.37 3f14A 112 38.52 3ebtA 132 40.53 d.17.4.9 158086 3erpA 353 41.07 1l1oC 181 42.54 b.40.4.3 73480 3gwrA 144 45.96 3h51A 156 46.22 3id3A 89 47.64 2p9mA 138 49.38 3ec9A 140 50.10 d.17.4.10 158092 3kspA 129 51.69 3i18A 100 52.76 3by8A 142 53.33 d.110.6.1 155722 2o66A 135 53.60 3ff2A 117 54.40 1qgdA 662 54.76 c.36.1.6,c.36.1.10,c.48.1.1 88367,88368,88369 1rypF 233 56.12 d.153.1.4 41937 1whi 122 56.62 1whiA 122 59.37 b.39.1.1 24810 2zc3A 168 60.55 3k0zA 159 61.60 3ghjA 141 63.31 3dbaA 180 66.19 2essA 248 67.53 d.38.1.8,d.38.1.8 132346,132347 3g0kA 148 67.96 3id1A 95 68.00 2a2lA 145 69.78 d.110.9.1 126035 3hcyA 151 77.62 2jv2A 83 78.43 3hx8A 129 78.69 1gnkA 112 79.44 d.58.5.1 39073 2dyuA 334 80.16 3kxrA 205 81.42 3ci6A 171 82.54 2ic7A 185 83.60 1oj5A 132 83.75 d.110.3.8 93087 1cwvA 492 84.21 b.1.14.1,b.1.14.1,b.1.14.1,b.1.14.1,d.169.1.3 22373,22374,22375,22376,42442 2vpaA 216 85.62 b.45.1.1 153421 2kjzA 144 85.88