# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2z6cA	129	4.14e-19		
2gj3A	120	4.45e-19		
3lyxA	124	7.86e-19		
2v0uA	146	1.39e-18		
2pr5A	132	4.56e-17		
3bwlA	126	1.11e-16		
3ewkA	227	1.13e-16		
3f1pA	117	1.20e-16		
1n9lA	109	1.61e-16	d.110.3.6	85468
1ew0A	130	2.09e-16	d.110.3.2	40905
1x0oA	119	3.49e-16		
3h9wA	115	4.25e-16		
3eehA	125	5.56e-16		
3luqA	114	7.66e-16		
2b02A	119	2.66e-15		
2vv6A	119	5.26e-15		
1xj4A	119	1.14e-14	d.110.3.2	122027
1bywA	110	2.14e-14	d.110.3.6	40912
3d72A	149	4.47e-14		
2pdrA	149	7.24e-14		
2pd8A	149	7.98e-14		
3f1pB	121	1.17e-13		
3gdiA	309	3.09e-13		
1v9yA	167	3.94e-13	d.110.3.2	108454
3fc7A	125	5.57e-13		
3icyA	118	7.55e-13		
2r78A	117	2.12e-11		
3caxA	369	8.08e-11		
3b33A	115	3.13e-08		
2jheA	190	1.78e-05		
3a0sA	96	0.000255		
3crkA	407	0.000258		
2qkpA	151	0.000281		
3a0vA	96	0.000959		
3fg8A	118	0.002266		
2vlgA	111	0.007331		
2o9cA	342	0.009337	d.110.2.1,d.110.3.9	148684,148685
1nwzA	125	0.02769	d.110.3.1	86370
2veaA	520	0.03339	d.110.2.1,d.110.2.4,d.110.3.9	153022,153023,153024
1mzuA	129	0.04181	d.110.3.1	79714
1ztuA	341	0.04447	d.110.2.1,d.110.3.9	146024,146025
2oolA	337	0.04873	d.110.2.1,d.110.3.9	148932,148933
3fosA	214	0.1795		
2p7jA	287	0.2498	d.110.6.2,d.110.6.2	149287,149288
1ykdA	398	0.2559		
2qhkA	174	1.103		
3c8cA	240	1.441		
3ighX	486	2.368		
1mc0A	368	5.273	d.110.2.1,d.110.2.1	78937,78938
2isnA	364	8.986		
3by9A	260	10.96		
2i2cA	272	11.02		
2g2cA	167	18.26	c.57.1.1	134535
1hyhA	309	20.23	c.2.1.5,d.162.1.1	30150,42117
1p0zA	131	21.66	d.110.6.1	93882
1l1oC	181	22.83	b.40.4.3	73480
3bzqA	114	23.27		
3fgyA	135	25.53		
2eg2A	112	25.55		
3grdA	134	27.92		
1nwwA	149	31.17	d.17.4.8	86306
2zhpA	124	33.13		
2zpmA	91	33.48		
3id4A	93	35.91		
3id1A	95	39.41		
3bxoA	239	45.41		
3erpA	353	46.87		
3id2A	90	47.32		
3by8A	142	55.30	d.110.6.1	155722
2w1rA	123	55.99		
2p9mA	138	57.09		
1ywfA	296	58.25	c.45.1.5	124144
2o66A	135	62.25		
2zc3A	168	62.62		
3ff2A	117	65.19		
3id3A	89	66.05		
3lulA	272	69.23		
2jv2A	83	69.39		
3k21A	191	70.94		
1s5aA	150	71.71	d.17.4.10	98525
3gwrA	144	76.23		
2rgtA	169	76.57		
2essA	248	77.69	d.38.1.8,d.38.1.8	132346,132347
1qgdA	662	78.24	c.36.1.6,c.36.1.10,c.48.1.1	88367,88368,88369
2dgbA	84	80.85		
3ec9A	140	83.33	d.17.4.10	158092
3ghjA	141	83.50		
2z2mA	168	84.08		
2egxA	269	84.31		
1cb0A	283	88.34	c.56.2.1	33790