# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2z6cA	129	1.80e-19		
2gj3A	120	2.39e-19		
3lyxA	124	2.83e-19		
2v0uA	146	1.21e-18		
2pr5A	132	2.85e-17		
3f1pA	117	5.98e-17		
3bwlA	126	7.19e-17		
3ewkA	227	7.81e-17		
1n9lA	109	8.49e-17	d.110.3.6	85468
1ew0A	130	9.94e-17	d.110.3.2	40905
1x0oA	119	1.74e-16		
3h9wA	115	2.58e-16		
3eehA	125	3.43e-16		
3luqA	114	4.72e-16		
2b02A	119	1.23e-15		
2vv6A	119	2.39e-15		
1xj4A	119	4.52e-15	d.110.3.2	122027
1bywA	110	9.84e-15	d.110.3.6	40912
3d72A	149	3.25e-14		
3f1pB	121	5.22e-14		
2pdrA	149	6.02e-14		
2pd8A	149	6.63e-14		
1v9yA	167	2.05e-13	d.110.3.2	108454
3gdiA	309	2.17e-13		
3icyA	118	4.07e-13		
3fc7A	125	4.12e-13		
2r78A	117	1.36e-11		
3caxA	369	4.23e-11		
3b33A	115	2.22e-08		
2jheA	190	1.51e-05		
3crkA	407	7.61e-05		
2qkpA	151	0.000138		
3a0sA	96	0.000227		
3a0vA	96	0.000663		
3fg8A	118	0.001786		
2o9cA	342	0.006551	d.110.2.1,d.110.3.9	148684,148685
2vlgA	111	0.007961		
2veaA	520	0.01360	d.110.2.1,d.110.2.4,d.110.3.9	153022,153023,153024
2oolA	337	0.02094	d.110.2.1,d.110.3.9	148932,148933
1ztuA	341	0.03487	d.110.2.1,d.110.3.9	146024,146025
1mzuA	129	0.03717	d.110.3.1	79714
1nwzA	125	0.03844	d.110.3.1	86370
3fosA	214	0.1532		
2p7jA	287	0.1799	d.110.6.2,d.110.6.2	149287,149288
1ykdA	398	0.2016		
2qhkA	174	0.9594		
3c8cA	240	1.189		
3ighX	486	1.742		
1mc0A	368	2.182	d.110.2.1,d.110.2.1	78937,78938
3by9A	260	8.219		
2isnA	364	10.50		
2i2cA	272	11.04		
1hyhA	309	20.29	c.2.1.5,d.162.1.1	30150,42117
1p0zA	131	21.61	d.110.6.1	93882
3bzqA	114	22.04		
2eg2A	112	22.59		
2g2cA	167	24.24	c.57.1.1	134535
1l1oC	181	26.55	b.40.4.3	73480
2zhpA	124	28.23		
3grdA	134	30.55		
3erpA	353	30.91		
3bxoA	239	31.65		
1nwwA	149	34.52	d.17.4.8	86306
3fgyA	135	35.38		
2w1rA	123	41.58		
3id4A	93	44.58		
2zc3A	168	46.11		
3by8A	142	46.58	d.110.6.1	155722
2zpmA	91	47.63		
2p9mA	138	50.16		
3id1A	95	53.32		
2o66A	135	55.98		
2rgtA	169	63.06		
3id2A	90	66.81		
3ff2A	117	70.45		
2z2mA	168	70.77		
3k21A	191	71.66		
1gnkA	112	75.90	d.58.5.1	39073
1qgdA	662	77.11	c.36.1.6,c.36.1.10,c.48.1.1	88367,88368,88369
3kxrA	205	77.13		
3dbaA	180	79.24		
2jv2A	83	79.75		
3ghjA	141	85.87		
2egxA	269	86.45		
2essA	248	86.51	d.38.1.8,d.38.1.8	132346,132347
3gwrA	144	86.99