# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3lyxA 124 3.27e-18 2gj3A 120 7.45e-18 2z6cA 129 7.73e-18 2v0uA 146 1.41e-17 1ew0A 130 6.25e-16 d.110.3.2 40905 2pr5A 132 7.99e-16 3f1pA 117 1.09e-15 3bwlA 126 1.89e-15 1x0oA 119 2.17e-15 1n9lA 109 2.52e-15 d.110.3.6 85468 3h9wA 115 2.89e-15 3eehA 125 4.28e-15 3ewkA 227 6.56e-15 2vv6A 119 1.91e-14 2b02A 119 2.48e-14 1xj4A 119 2.50e-14 d.110.3.2 122027 3luqA 114 2.87e-14 3f1pB 121 1.23e-13 3d72A 149 2.33e-13 1bywA 110 2.62e-13 d.110.3.6 40912 2pdrA 149 4.36e-13 2pd8A 149 5.75e-13 3gdiA 309 2.39e-12 1v9yA 167 3.26e-12 d.110.3.2 108454 3fc7A 125 4.43e-12 3icyA 118 1.66e-10 2r78A 117 2.73e-10 3caxA 369 1.04e-08 3b33A 115 4.24e-07 2jheA 190 0.000314 3a0sA 96 0.000489 3a0vA 96 0.000848 2vlgA 111 0.000993 3fg8A 118 0.001295 2o9cA 342 0.001529 d.110.2.1,d.110.3.9 148684,148685 3crkA 407 0.002222 2qkpA 151 0.003116 2veaA 520 0.003193 d.110.2.1,d.110.2.4,d.110.3.9 153022,153023,153024 2oolA 337 0.005907 d.110.2.1,d.110.3.9 148932,148933 1ztuA 341 0.009335 d.110.2.1,d.110.3.9 146024,146025 1nwzA 125 0.02033 d.110.3.1 86370 1mzuA 129 0.05703 d.110.3.1 79714 1ykdA 398 0.1337 2p7jA 287 0.2908 d.110.6.2,d.110.6.2 149287,149288 3fosA 214 0.6472 3c8cA 240 2.559 3ighX 486 2.902 1mc0A 368 3.376 d.110.2.1,d.110.2.1 78937,78938 3by9A 260 3.863 2w1rA 123 6.423 3by8A 142 6.596 d.110.6.1 155722 2z2mA 168 6.725 1p0zA 131 8.517 d.110.6.1 93882 2zc3A 168 9.719 1cwvA 492 20.46 b.1.14.1,b.1.14.1,b.1.14.1,b.1.14.1,d.169.1.3 22373,22374,22375,22376,42442 2eg2A 112 21.75 3ff2A 117 22.69 1nwwA 149 24.15 d.17.4.8 86306 3ci6A 171 26.45 1l1oC 181 37.75 b.40.4.3 73480 3bzqA 114 38.12 3kjjA 128 38.21 2essA 248 41.79 d.38.1.8,d.38.1.8 132346,132347 3icjA 534 43.18 2afdA 88 43.31 2qhkA 174 43.65 3erpA 353 45.13 2p9mA 138 47.69 2zzdC 243 48.79 2zq8A 262 51.87 1s5uA 138 52.96 d.38.1.1 98573 3id1A 95 54.23 2r80A 141 56.08 2o66A 135 56.90 1vbjA 281 58.79 1vqoK 132 59.27 b.39.1.1 120372 2z1eA 342 60.44 d.79.4.1,d.139.1.1 153932,153933 2p08A 115 63.49 3id4A 93 65.32 3f7jA 276 66.20 3buvA 326 67.64 2i2cA 272 70.56 3eauA 327 71.31 c.1.7.1 158080 3fkaA 120 72.70 2ownA 262 73.53 d.38.1.8,d.38.1.8 149045,149046 1jd1A 129 74.37 d.79.1.1 62890 3gwrA 144 75.52 2dyuA 334 75.60 1hw6A 278 76.53 c.1.7.1 61296 3cg7A 308 76.92 1zuaX 317 77.74 2wzmA 283 78.34 2uzjA 253 78.39 3hwwA 556 79.21 3d3sA 189 80.48 1qahA 136 84.37 d.79.1.1 96338 2gw8A 114 84.84 1z54A 132 85.59 d.38.1.1 124450 2x2bA 78 86.20 1qd9A 124 87.35 d.79.1.1 39758 1pvmA 184 87.38 d.37.1.1,g.41.13.1 144367,95173 1pyfA 312 87.73 c.1.7.1 95334