# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2z6cA 129 5.94e-19 2gj3A 120 8.02e-19 3lyxA 124 1.17e-18 2v0uA 146 2.52e-18 2pr5A 132 1.14e-16 3f1pA 117 1.85e-16 1n9lA 109 2.07e-16 d.110.3.6 85468 1ew0A 130 2.58e-16 d.110.3.2 40905 3bwlA 126 2.78e-16 3ewkA 227 2.92e-16 3h9wA 115 4.45e-16 1x0oA 119 5.28e-16 2b02A 119 1.18e-15 2vv6A 119 3.58e-15 3eehA 125 3.72e-15 1xj4A 119 4.51e-15 d.110.3.2 122027 3luqA 114 8.61e-15 1bywA 110 2.06e-14 d.110.3.6 40912 3f1pB 121 2.61e-14 3d72A 149 6.58e-14 2pdrA 149 7.94e-14 3gdiA 309 9.40e-14 2pd8A 149 1.27e-13 1v9yA 167 1.82e-13 d.110.3.2 108454 3icyA 118 4.88e-13 3fc7A 125 1.95e-12 2r78A 117 7.69e-12 3caxA 369 5.64e-11 3b33A 115 2.93e-08 2qkpA 151 5.22e-05 2jheA 190 6.62e-05 3a0sA 96 0.000135 3crkA 407 0.000248 3a0vA 96 0.000413 3fg8A 118 0.001945 2vlgA 111 0.002262 2o9cA 342 0.003424 d.110.2.1,d.110.3.9 148684,148685 2veaA 520 0.006708 d.110.2.1,d.110.2.4,d.110.3.9 153022,153023,153024 2oolA 337 0.007905 d.110.2.1,d.110.3.9 148932,148933 1nwzA 125 0.01026 d.110.3.1 86370 1mzuA 129 0.02086 d.110.3.1 79714 1ztuA 341 0.02482 d.110.2.1,d.110.3.9 146024,146025 3fosA 214 0.09394 2p7jA 287 0.1271 d.110.6.2,d.110.6.2 149287,149288 1ykdA 398 0.1622 3ighX 486 0.9197 3c8cA 240 1.026 2qhkA 174 1.113 1mc0A 368 2.971 d.110.2.1,d.110.2.1 78937,78938 3by9A 260 3.189 2w1rA 123 8.478 1p0zA 131 12.00 d.110.6.1 93882 2isnA 364 14.20 1nwwA 149 15.55 d.17.4.8 86306 2zhpA 124 18.15 2i2cA 272 18.53 3grdA 134 19.38 3fgyA 135 20.49 3by8A 142 21.89 d.110.6.1 155722 3id4A 93 22.45 3bxoA 239 23.38 1l1oC 181 29.22 b.40.4.3 73480 3h51A 156 29.47 2essA 248 29.48 d.38.1.8,d.38.1.8 132346,132347 1vqoK 132 29.63 b.39.1.1 120372 3id2A 90 31.57 3icjA 534 33.15 1whiA 122 34.96 b.39.1.1 24810 1whi 122 35.12 3ff2A 117 39.38 2zpmA 91 39.55 1oj5A 132 40.90 d.110.3.8 93087 1cwvA 492 41.99 b.1.14.1,b.1.14.1,b.1.14.1,b.1.14.1,d.169.1.3 22373,22374,22375,22376,42442 1s5uA 138 42.50 d.38.1.1 98573 3id3A 89 45.37 2eg2A 112 46.55 2dyuA 334 48.56 2rgtA 169 49.47 1hyhA 309 52.18 c.2.1.5,d.162.1.1 30150,42117 3ec9A 140 54.18 d.17.4.10 158092 1z54A 132 56.65 d.38.1.1 124450 2p9mA 138 56.92 1s5aA 150 59.05 d.17.4.10 98525 2zc3A 168 59.19 3gwrA 144 63.38 2zzdC 243 64.32 1lldA 319 65.52 c.2.1.5,d.162.1.1 30177,42144 3erpA 353 66.60 1dnlA 199 68.33 b.45.1.1 25753 3kf6A 159 69.94 1rypF 233 70.86 d.153.1.4 41937 3g0kA 148 70.94 3hcyA 151 70.98 2z2mA 168 75.13 3ebtA 132 78.65 d.17.4.9 158086 3bzqA 114 79.04 1frb 315 79.88 3id1A 95 81.27 2x7nC 132 82.17 3kxrA 205 83.95 1jg5A 83 89.75 d.205.1.1 66666