# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2z6cA 129 3.45e-20 3lyxA 124 5.03e-20 2v0uA 146 7.29e-19 2gj3A 120 8.39e-19 3bwlA 126 1.53e-17 3eehA 125 1.81e-17 2pr5A 132 4.47e-17 1n9lA 109 7.37e-17 d.110.3.6 85468 3ewkA 227 8.96e-17 3f1pA 117 1.05e-16 1ew0A 130 2.66e-16 d.110.3.2 40905 3h9wA 115 2.93e-16 1x0oA 119 4.23e-16 2b02A 119 1.18e-15 1xj4A 119 1.89e-15 d.110.3.2 122027 2vv6A 119 2.52e-15 3luqA 114 2.78e-15 2pdrA 149 6.85e-15 1bywA 110 1.62e-14 d.110.3.6 40912 3gdiA 309 1.66e-14 3d72A 149 1.72e-14 3f1pB 121 2.34e-14 2pd8A 149 5.08e-14 3fc7A 125 1.07e-13 1v9yA 167 2.24e-13 d.110.3.2 108454 3icyA 118 3.12e-13 2r78A 117 1.58e-12 3caxA 369 3.72e-11 3b33A 115 4.22e-08 2qkpA 151 2.66e-05 3a0sA 96 0.000212 3crkA 407 0.000520 3a0vA 96 0.000713 2jheA 190 0.000964 3fg8A 118 0.002156 2vlgA 111 0.005138 2o9cA 342 0.009716 d.110.2.1,d.110.3.9 148684,148685 2p7jA 287 0.01149 d.110.6.2,d.110.6.2 149287,149288 1nwzA 125 0.01344 d.110.3.1 86370 1ztuA 341 0.01864 d.110.2.1,d.110.3.9 146024,146025 1mzuA 129 0.02633 d.110.3.1 79714 1ykdA 398 0.1264 3fosA 214 0.4453 3c8cA 240 0.7219 2qhkA 174 0.7809 3ighX 486 1.768 1p0zA 131 1.773 d.110.6.1 93882 3erpA 353 2.871 2isnA 364 3.938 3by8A 142 4.074 d.110.6.1 155722 2i2cA 272 6.275 3ghjA 141 6.879 3bxoA 239 9.920 2dyuA 334 10.33 2zhpA 124 10.55 3id3A 89 11.32 2nujA 163 11.63 d.38.1.1 138608 2eg2A 112 11.97 2ownA 262 12.05 d.38.1.8,d.38.1.8 149045,149046 3cu3A 172 14.45 d.17.4.28 156988 3g0kA 148 14.56 2egxA 269 14.75 1nwwA 149 15.49 d.17.4.8 86306 3id4A 93 16.20 3exvA 213 18.47 3ff2A 117 18.77 1ty9A 222 18.93 b.45.1.1 112827 1l1oC 181 19.45 b.40.4.3 73480 2w1rA 123 19.57 3kxrA 205 19.74 2oolA 337 20.80 d.110.2.1,d.110.3.9 148932,148933 3feqA 423 21.08 2v9yA 334 21.46 3f9sA 146 22.33 1hyhA 309 22.50 c.2.1.5,d.162.1.1 30150,42117 1ci0A 228 22.85 b.45.1.1 25750 3f0yA 208 22.87 1c24A 263 24.14 d.127.1.1 41148 2e9qA 459 24.70 3fgyA 135 24.81 1o0xA 262 25.76 d.127.1.1 80755 2pzhA 135 26.83 3id2A 90 26.86 3grdA 134 29.83 3gzrA 146 30.02 1nx8A 273 34.04 b.82.2.8 86374 3cjmA 282 36.31 2hz7A 851 39.21 3by9A 260 39.44 1qo8A 566 41.36 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 3ec9A 140 43.88 d.17.4.10 158092 2essA 248 44.02 d.38.1.8,d.38.1.8 132346,132347 3h51A 156 45.02 1xnzA 264 45.59 d.127.1.1 115673 1z54A 132 46.51 d.38.1.1 124450 1q98A 165 46.52 c.47.1.10 96253 3b8lA 163 46.94 d.17.4.28 154955 3bzqA 114 48.87 2veaA 520 50.31 d.110.2.1,d.110.2.4,d.110.3.9 153022,153023,153024 3hcyA 151 50.82 1oj5A 132 51.90 d.110.3.8 93087 2z1eA 342 54.81 d.79.4.1,d.139.1.1 153932,153933 3d6kA 422 57.05 2ux0A 143 58.28 d.17.4.7 152231 3kf3A 509 59.05 3gwrA 144 60.03 2zpmA 91 60.05 3lyrA 243 60.41 3ebtA 132 61.35 d.17.4.9 158086 1urmA 172 62.36 c.47.1.10 113413 1j96A 323 63.66 c.1.7.1 71616 3huuA 305 65.85 3dbaA 180 67.24 2zc3A 168 71.68 1ia6A 441 72.25 a.102.1.2 76738 1z7lA 276 72.40 3k0zA 159 73.51 2zzdC 243 73.72 1hd2A 161 73.75 c.47.1.10 60962 2o66A 135 74.34 1jdpA 441 75.06 c.93.1.1 62906 1h09A 338 76.11 b.109.1.1,c.1.8.8 83420,83421 2hv2A 400 76.99 d.106.1.4,d.108.1.10 147406,147407 3dxoA 121 77.91 d.17.4.19 157933 3iutA 221 78.75 1tltA 319 79.23 c.2.1.3,d.81.1.5 107135,107136 3donA 277 79.73 3equA 542 79.82 3g1wA 305 79.92 3kdfB 132 80.13 1uhvA 500 80.14 b.71.1.2,c.1.8.3 99402,99403 1tuhA 156 80.90 d.17.4.11 107345 3m7iA 635 81.09 2zceA 291 81.18 1a9xB 379 81.62 c.8.3.1,c.23.16.1 30732,31409 3i5gC 159 81.89 3iagC 422 81.94 3dhvA 512 82.05 3kspA 129 83.18 1mdoA 393 88.68 c.67.1.4 79013 1yt5A 258 89.50 1ee8A 266 89.50 a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825