# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2z6cA	129	1.94e-19		
2gj3A	120	5.00e-19		
3lyxA	124	5.52e-19		
2v0uA	146	9.71e-19		
2pr5A	132	4.68e-17		
3f1pA	117	6.36e-17		
3bwlA	126	1.00e-16		
1n9lA	109	1.16e-16	d.110.3.6	85468
3ewkA	227	1.40e-16		
1ew0A	130	1.65e-16	d.110.3.2	40905
3h9wA	115	1.77e-16		
1x0oA	119	2.16e-16		
2b02A	119	9.40e-16		
3eehA	125	1.06e-15		
2vv6A	119	1.97e-15		
1xj4A	119	2.12e-15	d.110.3.2	122027
3luqA	114	2.52e-15		
1bywA	110	1.60e-14	d.110.3.6	40912
3f1pB	121	1.81e-14		
3d72A	149	2.73e-14		
2pdrA	149	4.00e-14		
3gdiA	309	5.92e-14		
2pd8A	149	6.27e-14		
1v9yA	167	1.42e-13	d.110.3.2	108454
3icyA	118	1.95e-13		
3fc7A	125	7.50e-13		
2r78A	117	7.34e-12		
3caxA	369	3.67e-11		
3b33A	115	2.39e-08		
2jheA	190	4.11e-05		
2qkpA	151	6.20e-05		
3a0sA	96	0.000109		
3crkA	407	0.000237		
3a0vA	96	0.000368		
3fg8A	118	0.001409		
2vlgA	111	0.004030		
2o9cA	342	0.005784	d.110.2.1,d.110.3.9	148684,148685
2veaA	520	0.008742	d.110.2.1,d.110.2.4,d.110.3.9	153022,153023,153024
1nwzA	125	0.01363	d.110.3.1	86370
2oolA	337	0.01695	d.110.2.1,d.110.3.9	148932,148933
1mzuA	129	0.02885	d.110.3.1	79714
1ztuA	341	0.04641	d.110.2.1,d.110.3.9	146024,146025
1ykdA	398	0.1631		
3fosA	214	0.1680		
2p7jA	287	0.1893	d.110.6.2,d.110.6.2	149287,149288
3c8cA	240	1.134		
3ighX	486	1.654		
2qhkA	174	1.837		
1mc0A	368	5.463	d.110.2.1,d.110.2.1	78937,78938
3by9A	260	6.962		
1p0zA	131	8.256	d.110.6.1	93882
2isnA	364	11.25		
2zhpA	124	12.85		
2i2cA	272	17.33		
3bxoA	239	21.83		
1hyhA	309	22.76	c.2.1.5,d.162.1.1	30150,42117
1nwwA	149	24.39	d.17.4.8	86306
1l1oC	181	24.59	b.40.4.3	73480
2w1rA	123	25.31		
3fgyA	135	28.37		
3by8A	142	30.00	d.110.6.1	155722
3id4A	93	34.11		
2eg2A	112	34.18		
3ff2A	117	36.29		
3grdA	134	38.04		
3id2A	90	38.22		
2zc3A	168	40.07		
3h51A	156	40.14		
2zpmA	91	41.47		
1oj5A	132	47.12	d.110.3.8	93087
3erpA	353	50.39		
2essA	248	51.31	d.38.1.8,d.38.1.8	132346,132347
2z2mA	168	51.84		
1nx8A	273	59.64	b.82.2.8	86374
3k21A	191	59.91		
3bzqA	114	62.45		
1z54A	132	65.23	d.38.1.1	124450
2ic7A	185	66.59		
3id1A	95	67.53		
3id3A	89	69.13		
3icjA	534	71.96		
1lldA	319	74.63	c.2.1.5,d.162.1.1	30177,42144
1ywfA	296	75.76	c.45.1.5	124144
3gwrA	144	88.04		
1cwvA	492	88.54	b.1.14.1,b.1.14.1,b.1.14.1,b.1.14.1,d.169.1.3	22373,22374,22375,22376,42442
2g2cA	167	88.78	c.57.1.1	134535
2a2lA	145	89.53	d.110.9.1	126035