# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2z6cA 129 2.94e-20 3lyxA 124 5.58e-20 2gj3A 120 6.60e-20 2v0uA 146 1.90e-19 2pr5A 132 1.14e-17 3f1pA 117 1.22e-17 3bwlA 126 1.62e-17 1n9lA 109 2.12e-17 d.110.3.6 85468 1ew0A 130 2.34e-17 d.110.3.2 40905 1x0oA 119 2.62e-17 3ewkA 227 2.94e-17 3h9wA 115 3.94e-17 3eehA 125 7.98e-17 3luqA 114 1.76e-16 2b02A 119 2.36e-16 2vv6A 119 5.19e-16 1xj4A 119 6.83e-16 d.110.3.2 122027 1bywA 110 5.47e-15 d.110.3.6 40912 3f1pB 121 8.34e-15 3d72A 149 1.46e-14 2pdrA 149 2.51e-14 2pd8A 149 2.81e-14 3gdiA 309 3.81e-14 3icyA 118 5.20e-14 1v9yA 167 1.21e-13 d.110.3.2 108454 3fc7A 125 2.84e-13 2r78A 117 3.94e-12 3caxA 369 1.76e-11 3b33A 115 2.24e-08 2jheA 190 2.84e-05 3crkA 407 6.81e-05 2qkpA 151 0.000103 3a0sA 96 0.000142 3a0vA 96 0.000308 3fg8A 118 0.006349 2vlgA 111 0.007571 2o9cA 342 0.007852 d.110.2.1,d.110.3.9 148684,148685 2veaA 520 0.009301 d.110.2.1,d.110.2.4,d.110.3.9 153022,153023,153024 1mzuA 129 0.02304 d.110.3.1 79714 1nwzA 125 0.02403 d.110.3.1 86370 2oolA 337 0.04352 d.110.2.1,d.110.3.9 148932,148933 1ztuA 341 0.06405 d.110.2.1,d.110.3.9 146024,146025 1ykdA 398 0.1310 2p7jA 287 0.1762 d.110.6.2,d.110.6.2 149287,149288 3fosA 214 0.2550 3c8cA 240 0.8276 2qhkA 174 1.323 3ighX 486 1.338 2isnA 364 4.559 3by9A 260 6.699 1l1oC 181 8.616 b.40.4.3 73480 2i2cA 272 8.989 1mc0A 368 9.097 d.110.2.1,d.110.2.1 78937,78938 2zpmA 91 16.06 3erpA 353 16.34 1nwwA 149 20.72 d.17.4.8 86306 3bxoA 239 22.63 2zhpA 124 24.18 1p0zA 131 24.62 d.110.6.1 93882 3grdA 134 25.14 2eg2A 112 25.35 3id2A 90 27.17 1hyhA 309 28.75 c.2.1.5,d.162.1.1 30150,42117 3id4A 93 30.34 3fgyA 135 32.08 3ff2A 117 32.33 3by8A 142 34.75 d.110.6.1 155722 2zc3A 168 37.42 1jwiB 125 37.59 d.169.1.1 67384 2z2mA 168 38.91 1cwvA 492 39.04 b.1.14.1,b.1.14.1,b.1.14.1,b.1.14.1,d.169.1.3 22373,22374,22375,22376,42442 1oj5A 132 41.20 d.110.3.8 93087 3bzqA 114 41.23 3id3A 89 44.02 3id1A 95 46.51 3i1eA 90 48.52 1ugpA 203 53.15 d.149.1.1 107831 2dyuA 334 54.74 1j57A 143 58.65 d.221.1.1 77079 2o66A 135 61.06 2jv2A 83 61.20 1gveA 327 62.33 c.1.7.1 70597 2w1rA 123 64.29 3ec9A 140 65.74 d.17.4.10 158092 3i18A 100 68.48 2zzdC 243 68.93 3gwrA 144 69.69 2r3bA 310 70.33 2essA 248 73.46 d.38.1.8,d.38.1.8 132346,132347 2gw8A 114 75.73 3iutA 221 78.80 3k21A 191 79.63 3h51A 156 81.26 2cz1A 206 81.59 d.149.1.1 131033 3icjA 534 83.13 2ic7A 185 83.94 3psgA 370 87.71 b.50.1.2 26841 1gnkA 112 88.60 d.58.5.1 39073