# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2z6cA	129	7.71e-20		
3lyxA	124	9.78e-20		
2gj3A	120	1.24e-19		
2v0uA	146	5.40e-19		
2pr5A	132	1.97e-17		
3f1pA	117	2.11e-17		
1n9lA	109	2.72e-17	d.110.3.6	85468
3ewkA	227	3.46e-17		
3bwlA	126	3.50e-17		
3h9wA	115	5.77e-17		
1x0oA	119	6.32e-17		
1ew0A	130	6.64e-17	d.110.3.2	40905
3eehA	125	1.55e-16		
3luqA	114	3.54e-16		
2b02A	119	5.47e-16		
2vv6A	119	8.84e-16		
1xj4A	119	1.03e-15	d.110.3.2	122027
3f1pB	121	8.54e-15		
3gdiA	309	8.63e-15		
1bywA	110	1.07e-14	d.110.3.6	40912
3d72A	149	2.24e-14		
2pd8A	149	4.21e-14		
2pdrA	149	4.50e-14		
1v9yA	167	1.11e-13	d.110.3.2	108454
3icyA	118	1.59e-13		
3fc7A	125	7.65e-13		
2r78A	117	4.93e-12		
3caxA	369	7.55e-11		
3b33A	115	1.58e-08		
2jheA	190	1.58e-05		
3crkA	407	3.85e-05		
3a0sA	96	0.000187		
2qkpA	151	0.000194		
3a0vA	96	0.000480		
3fg8A	118	0.001814		
2vlgA	111	0.003625		
2o9cA	342	0.005662	d.110.2.1,d.110.3.9	148684,148685
2oolA	337	0.01095	d.110.2.1,d.110.3.9	148932,148933
1nwzA	125	0.01238	d.110.3.1	86370
2veaA	520	0.01371	d.110.2.1,d.110.2.4,d.110.3.9	153022,153023,153024
1mzuA	129	0.01404	d.110.3.1	79714
1ztuA	341	0.09138	d.110.2.1,d.110.3.9	146024,146025
1ykdA	398	0.1085		
3fosA	214	0.1152		
2p7jA	287	0.1732	d.110.6.2,d.110.6.2	149287,149288
3c8cA	240	0.3922		
3ighX	486	0.8236		
2qhkA	174	0.8280		
3by9A	260	4.041		
1mc0A	368	4.276	d.110.2.1,d.110.2.1	78937,78938
2isnA	364	7.473		
1l1oC	181	16.53	b.40.4.3	73480
2eg2A	112	18.07		
3bxoA	239	18.49		
3grdA	134	21.99		
1nwwA	149	23.33	d.17.4.8	86306
2zc3A	168	26.03		
2zzdC	243	27.44		
2i2cA	272	28.54		
2z2mA	168	28.78		
3erpA	353	29.90		
3bzqA	114	30.67		
2zpmA	91	31.62		
2dyuA	334	33.66		
3fgyA	135	35.67		
1oj5A	132	37.41	d.110.3.8	93087
1vqoK	132	40.47	b.39.1.1	120372
3id4A	93	41.39		
3id3A	89	45.36		
3icjA	534	47.67		
3id2A	90	50.88		
3ff2A	117	51.28		
3by8A	142	51.76	d.110.6.1	155722
3iutA	221	52.38		
3ec9A	140	55.76	d.17.4.10	158092
1hyhA	309	56.96	c.2.1.5,d.162.1.1	30150,42117
1whi	122	56.99		
1whiA	122	57.50	b.39.1.1	24810
1p0zA	131	61.13	d.110.6.1	93882
1jwiB	125	62.72	d.169.1.1	67384
2p9mA	138	65.59		
3id1A	95	66.55		
2zhpA	124	66.67		
2g2cA	167	70.09	c.57.1.1	134535
2o66A	135	70.48		
2rgtA	169	71.05		
2jv2A	83	74.58		
3k21A	191	74.70		
1s5aA	150	75.46	d.17.4.10	98525
3i1eA	90	76.72		
2cz1A	206	77.43	d.149.1.1	131033
1j96A	323	78.85	c.1.7.1	71616
2w1rA	123	79.39		
3eauA	327	81.08	c.1.7.1	158080
3i18A	100	82.89		
2a2lA	145	83.20	d.110.9.1	126035
2kjkA	100	83.72		
1frb	315	84.12		
2qdyA	207	84.36	d.149.1.1	150674
1gnkA	112	84.90	d.58.5.1	39073
2essA	248	86.12	d.38.1.8,d.38.1.8	132346,132347
1ugpA	203	86.80	d.149.1.1	107831
1ci0A	228	87.06	b.45.1.1	25750
3g0kA	148	87.47