# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lyxA	124	1.76e-19		
2z6cA	129	1.92e-19		
2gj3A	120	2.22e-19		
2v0uA	146	3.42e-18		
3bwlA	126	5.62e-17		
2pr5A	132	6.20e-17		
1ew0A	130	6.51e-17	d.110.3.2	40905
3ewkA	227	7.22e-17		
1n9lA	109	7.89e-17	d.110.3.6	85468
3f1pA	117	1.03e-16		
1x0oA	119	1.98e-16		
3eehA	125	2.02e-16		
3h9wA	115	3.05e-16		
3luqA	114	7.00e-16		
2b02A	119	9.60e-16		
2vv6A	119	1.52e-15		
1xj4A	119	2.04e-15	d.110.3.2	122027
3f1pB	121	1.91e-14		
1bywA	110	1.92e-14	d.110.3.6	40912
3gdiA	309	3.74e-14		
3d72A	149	3.84e-14		
2pdrA	149	8.59e-14		
2pd8A	149	8.72e-14		
1v9yA	167	2.06e-13	d.110.3.2	108454
3icyA	118	2.12e-13		
3fc7A	125	9.53e-13		
2r78A	117	8.47e-12		
3caxA	369	4.01e-11		
3b33A	115	2.93e-08		
2jheA	190	1.16e-05		
2qkpA	151	8.92e-05		
3crkA	407	0.000176		
3a0sA	96	0.000237		
3a0vA	96	0.000432		
2vlgA	111	0.003716		
3fg8A	118	0.003948		
2o9cA	342	0.005409	d.110.2.1,d.110.3.9	148684,148685
2veaA	520	0.009589	d.110.2.1,d.110.2.4,d.110.3.9	153022,153023,153024
1mzuA	129	0.01194	d.110.3.1	79714
2oolA	337	0.01217	d.110.2.1,d.110.3.9	148932,148933
1nwzA	125	0.01396	d.110.3.1	86370
1ztuA	341	0.03770	d.110.2.1,d.110.3.9	146024,146025
2p7jA	287	0.1020	d.110.6.2,d.110.6.2	149287,149288
1ykdA	398	0.1358		
3fosA	214	0.1948		
3c8cA	240	0.4631		
2qhkA	174	0.7352		
3ighX	486	1.352		
3by9A	260	2.344		
1mc0A	368	3.975	d.110.2.1,d.110.2.1	78937,78938
2isnA	364	11.05		
1nwwA	149	15.61	d.17.4.8	86306
1l1oC	181	15.76	b.40.4.3	73480
3bxoA	239	16.47		
2zpmA	91	16.50		
2eg2A	112	16.62		
3fgyA	135	22.44		
2i2cA	272	23.67		
3id2A	90	25.00		
3id4A	93	25.08		
2w1rA	123	27.86		
3bzqA	114	29.43		
3grdA	134	30.78		
3by8A	142	32.35	d.110.6.1	155722
3id3A	89	32.48		
2zzdC	243	36.28		
1p0zA	131	39.13	d.110.6.1	93882
1hyhA	309	39.62	c.2.1.5,d.162.1.1	30150,42117
2zhpA	124	39.82		
1ci0A	228	43.59	b.45.1.1	25750
3i1eA	90	45.52		
2gw8A	114	45.65		
2z2mA	168	46.01		
3ff2A	117	47.95		
2zc3A	168	48.55		
1vqoK	132	55.33	b.39.1.1	120372
3lm2A	226	55.90		
2dyuA	334	57.25		
3iutA	221	58.50		
1lldA	319	58.62	c.2.1.5,d.162.1.1	30177,42144
2o66A	135	59.00		
1s5aA	150	59.09	d.17.4.10	98525
1jwiB	125	60.06	d.169.1.1	67384
3ffhA	363	60.64		
2p9mA	138	62.11		
2a2lA	145	62.31	d.110.9.1	126035
1whiA	122	64.06	b.39.1.1	24810
3icjA	534	64.17		
1gnkA	112	64.87	d.58.5.1	39073
3id1A	95	66.56		
1whi	122	67.06		
3i18A	100	67.13		
2g2cA	167	67.29	c.57.1.1	134535
2zgiA	246	68.48		
2jv2A	83	71.93		
1oj5A	132	72.87	d.110.3.8	93087
3erpA	353	73.22		
1frb	315	79.27		
2ic7A	185	81.55		
1uf5A	303	83.65	d.160.1.2	107808
3ec9A	140	85.68	d.17.4.10	158092
2kjkA	100	87.47		
3buvA	326	88.09		
2rgtA	169	88.37