# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2v0uA	146	9.10e-18		
3lyxA	124	2.04e-17		
2gj3A	120	4.03e-17		
2z6cA	129	4.60e-17		
1ew0A	130	1.63e-15	d.110.3.2	40905
3eehA	125	3.20e-15		
3f1pA	117	3.57e-15		
1x0oA	119	5.90e-15		
2pr5A	132	6.55e-15		
3ewkA	227	6.84e-15		
3bwlA	126	1.63e-14		
3h9wA	115	1.97e-14		
1n9lA	109	2.60e-14	d.110.3.6	85468
3luqA	114	2.69e-14		
2vv6A	119	1.03e-13		
1xj4A	119	1.49e-13	d.110.3.2	122027
2b02A	119	1.79e-13		
1bywA	110	2.69e-13	d.110.3.6	40912
2pdrA	149	5.80e-13		
2pd8A	149	6.04e-13		
3f1pB	121	1.27e-12		
3d72A	149	1.58e-12		
3gdiA	309	2.43e-12		
1v9yA	167	3.22e-11	d.110.3.2	108454
3fc7A	125	3.42e-11		
2r78A	117	5.57e-10		
3icyA	118	2.75e-09		
3caxA	369	5.88e-09		
3b33A	115	2.97e-07		
3crkA	407	0.000538		
2jheA	190	0.001439		
3a0sA	96	0.002654		
2o9cA	342	0.002905	d.110.2.1,d.110.3.9	148684,148685
2oolA	337	0.004559	d.110.2.1,d.110.3.9	148932,148933
3a0vA	96	0.005758		
2veaA	520	0.007164	d.110.2.1,d.110.2.4,d.110.3.9	153022,153023,153024
1ztuA	341	0.01051	d.110.2.1,d.110.3.9	146024,146025
2qkpA	151	0.01167		
2vlgA	111	0.02659		
2p7jA	287	0.06590	d.110.6.2,d.110.6.2	149287,149288
1nwzA	125	0.09425	d.110.3.1	86370
1ykdA	398	0.1092		
3fg8A	118	0.1192		
1mzuA	129	0.6606	d.110.3.1	79714
3c8cA	240	0.8529		
3fosA	214	1.373		
3ighX	486	2.922		
1mc0A	368	3.725	d.110.2.1,d.110.2.1	78937,78938
1p0zA	131	8.679	d.110.6.1	93882
1l1oC	181	9.756	b.40.4.3	73480
3by9A	260	11.35		
3by8A	142	11.38	d.110.6.1	155722
3dbaA	180	12.80		
2w1rA	123	16.36		
2a2lA	145	24.74	d.110.9.1	126035
1h2wA	710	33.82	b.69.7.1,c.69.1.4	76596,76597
3hcyA	151	39.19		
2gx5A	170	40.11		
2qhkA	174	40.82		
3kspA	129	42.78		
3i5gC	159	43.31		
1pneA	139	52.61	d.110.1.1	40866
2pbdP	139	53.15	d.110.1.1	149354
2k54A	123	63.28	d.17.4.29	148271
1nwwA	149	68.08	d.17.4.8	86306
3gwrA	144	71.97		
2pavP	139	72.77	d.110.1.1	149350
3f14A	112	73.36		
2bdvA	231	76.31	d.303.1.1	128345
2qdyA	207	78.35	d.149.1.1	150674
3ff2A	117	79.07		
3erpA	353	79.64		
2eg2A	112	80.51		
1vj1A	363	83.33	b.35.1.2,c.2.1.1	100794,100795
2zzdC	243	83.47		
1lzlA	323	83.53	c.69.1.2	78306
1nslA	184	84.64	d.108.1.1	86137
1ugpA	203	85.06	d.149.1.1	107831
1y7oA	218	85.96	c.14.1.1	122701
3fkaA	120	87.82		
3m1xA	148	88.48		
1qahA	136	89.28	d.79.1.1	96338
2vjwA	149	89.80