# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gj3A 120 6.44e-16 3lyxA 124 8.69e-16 2z6cA 129 1.30e-15 2v0uA 146 1.97e-15 3ewkA 227 1.93e-14 3eehA 125 2.73e-14 2pr5A 132 7.24e-14 3h9wA 115 7.31e-14 3bwlA 126 7.90e-14 3f1pA 117 8.06e-14 1n9lA 109 2.04e-13 d.110.3.6 85468 1x0oA 119 2.99e-13 1ew0A 130 3.43e-13 d.110.3.2 40905 3luqA 114 5.66e-13 1xj4A 119 1.27e-12 d.110.3.2 122027 2vv6A 119 1.54e-12 2b02A 119 1.69e-12 1bywA 110 2.27e-12 d.110.3.6 40912 3f1pB 121 4.59e-12 2pd8A 149 1.19e-11 2pdrA 149 1.32e-11 3d72A 149 1.41e-11 3gdiA 309 2.07e-11 3fc7A 125 8.16e-11 1v9yA 167 5.96e-10 d.110.3.2 108454 2r78A 117 9.25e-10 3icyA 118 1.81e-09 3caxA 369 2.24e-08 3b33A 115 8.90e-07 3a0sA 96 0.001876 2qkpA 151 0.003366 2jheA 190 0.004438 3a0vA 96 0.004821 3crkA 407 0.006551 2vlgA 111 0.01494 2o9cA 342 0.03463 d.110.2.1,d.110.3.9 148684,148685 3fg8A 118 0.05210 2oolA 337 0.1064 d.110.2.1,d.110.3.9 148932,148933 2veaA 520 0.1770 d.110.2.1,d.110.2.4,d.110.3.9 153022,153023,153024 1ztuA 341 0.1945 d.110.2.1,d.110.3.9 146024,146025 1ykdA 398 0.2184 1nwzA 125 0.5985 d.110.3.1 86370 3ighX 486 0.7466 2p7jA 287 0.9253 d.110.6.2,d.110.6.2 149287,149288 1mzuA 129 1.061 d.110.3.1 79714 3c8cA 240 1.236 3fosA 214 1.298 1mc0A 368 1.393 d.110.2.1,d.110.2.1 78937,78938 2qhkA 174 3.140 2zq8A 262 9.011 3by8A 142 14.04 d.110.6.1 155722 2z2mA 168 17.73 3by9A 260 18.33 2w1rA 123 19.13 1nwwA 149 20.52 d.17.4.8 86306 1p0zA 131 22.19 d.110.6.1 93882 3f14A 112 23.65 3erpA 353 24.00 2zc3A 168 26.32 3icjA 534 31.04 3h51A 156 32.39 2a2lA 145 32.92 d.110.9.1 126035 3grdA 134 34.85 2zq7A 262 35.29 3id4A 93 37.89 2ov5A 261 38.91 3ff2A 117 41.02 2zpmA 91 45.49 3ci6A 171 48.43 3ec9A 140 49.64 d.17.4.10 158092 3fkaA 120 50.23 2wk0A 265 52.59 2ic7A 185 53.31 3k0zA 159 54.10 3g0kA 148 55.07 3id3A 89 55.29 3fgyA 135 57.10 1i2kA 269 58.23 e.17.1.1 90661 1l1oC 181 58.40 b.40.4.3 73480 3gwrA 144 61.38 1oj5A 132 67.32 d.110.3.8 93087 1cwvA 492 69.35 b.1.14.1,b.1.14.1,b.1.14.1,b.1.14.1,d.169.1.3 22373,22374,22375,22376,42442 1lo7A 141 70.03 d.38.1.1 74144 3lulA 272 73.14 2p74A 263 73.22 1z54A 132 79.15 d.38.1.1 124450 3iwgA 276 79.89 2jc7A 244 82.38 1nx8A 273 87.14 b.82.2.8 86374