# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3lyxA 124 3.21e-11 2gj3A 120 9.53e-11 1ew0A 130 2.47e-09 d.110.3.2 40905 1n9lA 109 2.78e-09 d.110.3.6 85468 2b02A 119 3.00e-09 3h9wA 115 4.05e-09 2z6cA 129 5.27e-09 3f1pB 121 9.06e-09 1x0oA 119 9.29e-09 3f1pA 117 1.66e-08 2v0uA 146 3.44e-08 1xj4A 119 3.83e-08 d.110.3.2 122027 3bwlA 126 4.56e-08 2vv6A 119 5.85e-08 3luqA 114 7.63e-08 3d72A 149 1.03e-07 2pd8A 149 1.07e-07 2pdrA 149 1.08e-07 1bywA 110 1.25e-07 d.110.3.6 40912 2pr5A 132 1.55e-07 3eehA 125 2.05e-07 3fc7A 125 4.24e-07 1v9yA 167 5.60e-07 d.110.3.2 108454 2r78A 117 1.40e-06 3ewkA 227 1.59e-06 3gdiA 309 6.50e-06 3caxA 369 1.64e-05 2vlgA 111 0.000384 2qkpA 151 0.000676 3a0sA 96 0.000737 3a0vA 96 0.000803 3b33A 115 0.001017 3icyA 118 0.001282 1nwzA 125 0.02195 d.110.3.1 86370 3fg8A 118 0.03909 2jheA 190 0.09789 1mzuA 129 0.1220 d.110.3.1 79714 2wkrA 332 1.893 2wkqA 332 3.203 2oolA 337 5.811 d.110.2.1,d.110.3.9 148932,148933 3k6eA 156 8.782 1p0zA 131 9.101 d.110.6.1 93882 2qhkA 174 10.32 2p08A 115 11.36 2wkpA 332 12.38 1zn6A 227 12.55 d.303.1.1 125373 3iwgA 276 15.54 3fosA 214 16.01 3bqaA 148 16.38 2vdrB 461 18.08 2hjeA 221 20.81 d.110.6.3 147294 3f5bA 182 22.20 3by9A 260 22.26 3h3hA 122 22.83 1lzlA 323 23.02 c.69.1.2 78306 2cw9A 194 23.32 d.17.4.13 130920 1vr9A 213 25.08 d.37.1.1 144433 2w1rA 123 25.44 2fckA 181 27.08 d.108.1.1 133272 3dxoA 121 28.34 d.17.4.19 157933 3b42A 135 30.45 1tyeB 440 31.42 b.1.15.1,c.62.1.1,g.16.2.1 112830,112831,112832 1repC 251 33.04 a.4.5.10,a.4.5.10 16125,16126 2ek8A 421 35.21 3lqnA 150 35.25 1ztuA 341 41.89 d.110.2.1,d.110.3.9 146024,146025 3bcyA 155 42.83 1yavA 159 43.52 d.37.1.1 144629 2z72A 342 44.88 3ga7A 326 49.88 2qdfA 335 50.74 3h5zA 438 52.34 2e12A 101 53.52 2afwA 329 53.61 c.56.5.8 126707 3gwrA 144 53.76 3guxA 314 53.95 3c8cA 240 54.08 3m3pA 250 54.36 1kllA 130 59.67 d.32.1.2 72720 3ff0A 163 62.54 3iv4A 112 62.77 3kolA 156 68.15 2o9cA 342 68.93 d.110.2.1,d.110.3.9 148684,148685 2wsaA 438 70.74 3b47A 134 71.58 2zxrA 666 71.62 2z2mA 168 72.37 2axoA 270 73.38 c.47.1.19 127496 3jtfA 129 73.97 1pvmA 184 73.99 d.37.1.1,g.41.13.1 144367,95173 1zhhB 242 74.39 d.110.6.3 144740 1oj5A 132 75.76 d.110.3.8 93087 1jjiA 311 77.27 c.69.1.2 66766 3i28A 555 80.78 2p9mA 138 81.79 2fclA 169 81.79 d.218.1.11 133273 1o7eA 276 82.12 e.3.1.1 92622 3gzrA 146 82.13 3ff6A 760 83.70 2yziA 138 84.27 d.37.1.1 153902 2h5gA 463 84.72 1sqhA 312 85.69 d.108.1.5 98966 3etdA 501 89.47 2wuuA 421 89.86