# List of top-scoring protein chains for T0523.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lyxA	124	5.94e-14		
3ewkA	227	1.23e-13		
2gj3A	120	2.15e-13		
2pr5A	132	1.06e-10		
1n9lA	109	2.01e-10	d.110.3.6	85468
2z6dA	130	9.47e-10		
2v0uA	146	1.43e-09		
2v1bA	144	1.75e-09		
3luqA	114	2.34e-09		
1lswA	131	3.45e-09	d.110.3.2	78181
1y28A	131	3.48e-09	d.110.3.2	116399
2z6cA	129	4.94e-09		
2cmnA	130	5.75e-09		
2r78A	117	7.42e-09		
1ew0A	130	1.37e-08	d.110.3.2	40905
2wkpA	332	1.71e-08		
3bwlA	126	2.31e-08		
2wkrA	332	2.45e-08		
2wkqA	332	3.54e-08		
1s67L	119	3.61e-08	d.110.3.2	105303
1bywA	110	6.69e-08	d.110.3.6	40912
2vv6A	119	7.69e-08		
1v9yA	167	7.98e-08	d.110.3.2	108454
3eehA	125	1.14e-07		
1jnuA	104	3.60e-07	d.110.3.6	71762
1xj3A	116	4.07e-07	d.110.3.2	122026
3f1pA	117	4.34e-06		
2a24A	107	5.38e-06		
2pd8A	149	5.61e-06		
1p97A	114	6.07e-06	d.110.3.7	94382
3is2A	154	6.22e-06		
2pdrA	149	6.49e-06		
3hjkA	154	6.90e-06		
3d72A	149	7.87e-06		
3h9wA	115	1.06e-05		
3hjiA	154	1.11e-05		
2b02A	119	1.64e-05		
1x0oA	119	1.96e-05		
2a24B	108	2.04e-05		
3f1pB	121	3.39e-05		
3a0rA	349	6.31e-05		
2k7sA	119	8.32e-05		
3icyA	118	0.000135		
3fc7A	125	0.000162		
3a0sA	96	0.000437		
3a0vA	96	0.000565		
3b33A	115	0.000804		
1ll8A	114	0.002012	d.110.3.5	78089
1otdA	125	0.003618	d.110.3.1	93513
2w0nA	118	0.003899		
3fg8A	118	0.008056		
1wa9A	368	0.009760		
3gecA	312	0.01003		
2jheA	190	0.01167		
1odvA	100	0.01531	d.110.3.1	86887
1gsvA	125	0.01586	d.110.3.1	65537
1ot6A	125	0.01964	d.110.3.1	93504
3caxA	369	0.02076		
1f9iA	125	0.02551	d.110.3.1	40898
3gdiA	309	0.03170		
1xfnA	113	0.03251	d.110.3.1	121934
2i9vA	125	0.03901		
1d7eA	122	0.04338	d.110.3.1	40900
1nwzA	125	0.04394	d.110.3.1	86370
2vlgA	111	0.05800		
2d02A	125	0.06248		
1gsxA	125	0.06449	d.110.3.1	65539
1f98A	125	0.1044	d.110.3.1	40899
2qkpA	151	0.1233		
1gswA	125	0.1570	d.110.3.1	65538
2q18X	293	8.362		
1wfxA	186	11.11	d.166.1.5	114596
1mzuA	129	17.52	d.110.3.1	79714
2veaA	520	17.67	d.110.2.1,d.110.2.4,d.110.3.9	153022,153023,153024
1sujA	392	24.26		
2rliA	171	37.71		
3cfiA	84	44.93		
2e70A	71	64.66		
2zyhA	475	65.09		
2retA	103	65.14	d.24.1.7	151983
2zyrA	484	65.63		
2zysA	479	65.67		
2zyiA	475	65.73		
1p0zA	131	74.50	d.110.6.1	93882
2v9aA	133	75.62	d.110.6.1	152803
2j80A	135	76.86	d.110.6.1	147906
1wfoA	130	78.64	b.1.2.1	120970
2v50A	1052	82.13		
3h7aA	252	83.49