# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3lyxA 124 9.41e-18 2gj3A 120 1.69e-17 2v0uA 146 7.70e-17 2z6cA 129 1.45e-16 2wkrA 332 5.40e-16 2wkqA 332 6.40e-16 1p97A 114 7.58e-16 d.110.3.7 94382 3ewkA 227 8.15e-16 2wkpA 332 1.01e-15 2pr5A 132 1.71e-15 3bwlA 126 2.88e-15 2b02A 119 3.57e-15 1bywA 110 3.89e-15 d.110.3.6 40912 1ew0A 130 5.96e-15 d.110.3.2 40905 3f1pA 117 1.03e-14 3eehA 125 1.41e-14 1n9lA 109 1.80e-14 d.110.3.6 85468 1x0oA 119 2.28e-14 3gdiA 309 2.34e-14 3f1pB 121 3.36e-14 3h9wA 115 3.52e-14 3luqA 114 4.67e-14 1xj4A 119 7.99e-14 d.110.3.2 122027 1lswA 131 8.52e-14 d.110.3.2 78181 1jnuA 104 1.10e-13 d.110.3.6 71762 2vv6A 119 1.52e-13 3icyA 118 3.07e-13 2pd8A 149 7.27e-13 2pdrA 149 1.15e-12 3d72A 149 1.46e-12 3fc7A 125 8.88e-12 1v9yA 167 1.05e-11 d.110.3.2 108454 3caxA 369 6.10e-09 2veaA 520 1.24e-08 d.110.2.1,d.110.2.4,d.110.3.9 153022,153023,153024 1w25A 459 1.92e-07 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 3b33A 115 5.31e-07 2r78A 117 1.32e-06 2o9cA 342 7.10e-06 d.110.2.1,d.110.3.9 148684,148685 2oolA 337 1.48e-05 d.110.2.1,d.110.3.9 148932,148933 2jheA 190 3.01e-05 1ll8A 114 6.46e-05 d.110.3.5 78089 2qkpA 151 0.000319 3a0sA 96 0.000366 3a0vA 96 0.001180 3pyp 125 0.004280 1nwzA 125 0.004506 d.110.3.1 86370 3fg8A 118 0.007907 1mzuA 129 0.008825 d.110.3.1 79714 2vlgA 111 0.01745 1mc0A 368 0.03086 d.110.2.1,d.110.2.1 78937,78938 3c8cA 240 0.3199 3by9A 260 0.4451 2p7jA 287 0.9620 d.110.6.2,d.110.6.2 149287,149288 1ztuA 341 1.360 d.110.2.1,d.110.3.9 146024,146025 3crkA 407 1.530 3fosA 214 1.762 1oj5A 132 3.832 d.110.3.8 93087 3bqxA 150 6.140 2qhkA 174 6.339 3f7sA 142 15.72 1l1oC 181 17.52 b.40.4.3 73480 3huhA 152 18.31 2zpmA 91 19.12 1p0zA 131 19.66 d.110.6.1 93882 3k6eA 156 21.42 2rbbA 141 21.90 3by8A 142 22.93 d.110.6.1 155722 3dm8A 143 24.19 d.17.4.20 157804 1s5aA 150 25.23 d.17.4.10 98525 1nwwA 149 27.90 d.17.4.8 86306 3id4A 93 27.96 1vqoK 132 28.05 b.39.1.1 120372 2q4aA 330 28.66 b.82.2.8 139839 2fckA 181 31.17 d.108.1.1 133272 1whi 122 32.52 1whiA 122 35.76 b.39.1.1 24810 1xqaA 113 36.17 d.32.1.2 115837 3fgyA 135 36.60 2w1rA 123 38.56 3ighX 486 38.58 1hzpA 335 41.32 c.95.1.2,c.95.1.2 61455,61456 2x7nC 132 43.67 2fsrA 195 43.67 d.108.1.1 134036 3id2A 90 45.03 3grdA 134 46.57 3kolA 156 48.31 3ddjA 296 57.26 d.37.1.1,d.37.1.1 157553,157554 3pcgM 238 57.39 b.3.6.1 22742 1et0A 269 57.61 e.17.1.1 43289 1eo9A 209 57.83 b.3.6.1 22731 3ff2A 117 61.58 3ebtA 132 63.97 d.17.4.9 158086 2zhpA 124 65.47 3ec9A 140 67.95 d.17.4.10 158092 3gwrA 144 69.87 1erzA 303 70.70 d.160.1.2 59498 3ey8A 133 72.39 3gzrA 146 81.59 2dlbA 80 81.84 b.174.1.1 146541 1woyA 500 84.75 a.27.1.1,c.26.1.1 121130,121131 3dnuA 440 88.19