# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3lyxA 124 1.88e-18 2gj3A 120 3.22e-18 2v0uA 146 1.85e-17 2z6cA 129 2.56e-17 2wkqA 332 1.34e-16 2wkrA 332 1.38e-16 1p97A 114 1.65e-16 d.110.3.7 94382 2wkpA 332 3.33e-16 3ewkA 227 3.52e-16 2pr5A 132 5.68e-16 1bywA 110 6.14e-16 d.110.3.6 40912 2b02A 119 6.60e-16 3bwlA 126 1.00e-15 3f1pA 117 1.08e-15 1ew0A 130 1.19e-15 d.110.3.2 40905 1n9lA 109 3.05e-15 d.110.3.6 85468 3eehA 125 3.26e-15 1x0oA 119 4.55e-15 3gdiA 309 5.26e-15 3h9wA 115 5.90e-15 3f1pB 121 6.14e-15 3luqA 114 1.71e-14 1lswA 131 1.77e-14 d.110.3.2 78181 1jnuA 104 2.09e-14 d.110.3.6 71762 1xj4A 119 2.14e-14 d.110.3.2 122027 2vv6A 119 3.42e-14 3icyA 118 5.23e-14 2pd8A 149 2.78e-13 3d72A 149 4.66e-13 2pdrA 149 5.22e-13 1v9yA 167 2.52e-12 d.110.3.2 108454 3fc7A 125 4.99e-12 3caxA 369 2.03e-09 2veaA 520 2.89e-08 d.110.2.1,d.110.2.4,d.110.3.9 153022,153023,153024 3b33A 115 2.77e-07 2r78A 117 3.95e-07 1w25A 459 5.05e-07 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 2o9cA 342 1.39e-05 d.110.2.1,d.110.3.9 148684,148685 2oolA 337 1.81e-05 d.110.2.1,d.110.3.9 148932,148933 2jheA 190 4.76e-05 1ll8A 114 6.73e-05 d.110.3.5 78089 2qkpA 151 0.000173 3a0sA 96 0.000253 3a0vA 96 0.000791 1nwzA 125 0.005690 d.110.3.1 86370 3pyp 125 0.005690 2vlgA 111 0.006357 3fg8A 118 0.01283 1mzuA 129 0.01817 d.110.3.1 79714 1mc0A 368 0.03911 d.110.2.1,d.110.2.1 78937,78938 3c8cA 240 0.3374 3by9A 260 0.4203 2p7jA 287 0.5310 d.110.6.2,d.110.6.2 149287,149288 3crkA 407 0.5631 3fosA 214 0.8907 1ztuA 341 1.723 d.110.2.1,d.110.3.9 146024,146025 1oj5A 132 3.511 d.110.3.8 93087 2qhkA 174 5.357 3bqxA 150 6.039 1p0zA 131 9.301 d.110.6.1 93882 3k6eA 156 9.99 1l1oC 181 10.71 b.40.4.3 73480 1s5aA 150 12.87 d.17.4.10 98525 3by8A 142 15.97 d.110.6.1 155722 2zpmA 91 18.74 2q4aA 330 19.15 b.82.2.8 139839 2fckA 181 20.97 d.108.1.1 133272 3huhA 152 21.85 3id4A 93 22.10 2rbbA 141 22.12 3ebtA 132 22.18 d.17.4.9 158086 3grdA 134 23.74 2w1rA 123 25.97 3id2A 90 32.07 3f7sA 142 32.59 1nwwA 149 32.60 d.17.4.8 86306 3ff2A 117 35.98 3f14A 112 36.24 3ddjA 296 41.36 d.37.1.1,d.37.1.1 157553,157554 1et0A 269 41.84 e.17.1.1 43289 2uxyA 341 41.99 2fsrA 195 45.18 d.108.1.1 134036 1erzA 303 46.16 d.160.1.2 59498 3fgyA 135 48.82 3dm8A 143 49.62 d.17.4.20 157804 3i7tA 149 53.58 2jv2A 83 59.28 1xqaA 113 61.04 d.32.1.2 115837 2bmxA 195 62.35 c.47.1.10 128817 1jg5A 83 62.82 d.205.1.1 66666 3ey8A 133 64.04 3ec9A 140 66.04 d.17.4.10 158092 1hzpA 335 68.13 c.95.1.2,c.95.1.2 61455,61456 3dnuA 440 68.57 1vqoK 132 70.29 b.39.1.1 120372 2zhpA 124 70.59 3ighX 486 70.69 3kolA 156 71.06 2kl1A 94 71.33 1a9xB 379 77.38 c.8.3.1,c.23.16.1 30732,31409 3kpbA 122 83.30 3k0zA 159 84.11 2essA 248 86.13 d.38.1.8,d.38.1.8 132346,132347