# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3lyxA 124 6.74e-23 2gj3A 120 2.29e-22 2v0uA 146 2.68e-21 2z6cA 129 1.28e-20 1p97A 114 1.88e-20 d.110.3.7 94382 2wkrA 332 5.40e-20 2wkqA 332 6.38e-20 2wkpA 332 1.09e-19 3f1pA 117 1.10e-19 2b02A 119 1.20e-19 2pr5A 132 1.78e-19 1ew0A 130 2.02e-19 d.110.3.2 40905 3ewkA 227 2.07e-19 1bywA 110 2.98e-19 d.110.3.6 40912 3bwlA 126 3.09e-19 1x0oA 119 4.14e-19 3gdiA 309 5.39e-19 1n9lA 109 1.06e-18 d.110.3.6 85468 3eehA 125 2.37e-18 3f1pB 121 2.60e-18 3h9wA 115 3.87e-18 1lswA 131 4.71e-18 d.110.3.2 78181 1xj4A 119 7.64e-18 d.110.3.2 122027 2vv6A 119 1.14e-17 1jnuA 104 1.62e-17 d.110.3.6 71762 3luqA 114 1.88e-17 2pd8A 149 2.45e-16 3icyA 118 4.28e-16 3d72A 149 4.29e-16 2pdrA 149 4.85e-16 1v9yA 167 1.98e-15 d.110.3.2 108454 3fc7A 125 8.85e-15 2veaA 520 4.57e-11 d.110.2.1,d.110.2.4,d.110.3.9 153022,153023,153024 3caxA 369 4.99e-11 3b33A 115 3.38e-09 2o9cA 342 1.12e-08 d.110.2.1,d.110.3.9 148684,148685 2r78A 117 2.12e-08 1w25A 459 2.80e-08 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 2oolA 337 4.69e-08 d.110.2.1,d.110.3.9 148932,148933 1ll8A 114 5.34e-07 d.110.3.5 78089 2jheA 190 6.87e-07 2qkpA 151 1.83e-05 3a0sA 96 2.06e-05 3a0vA 96 5.99e-05 3fg8A 118 9.50e-05 1nwzA 125 0.000127 d.110.3.1 86370 3pyp 125 0.000128 1mzuA 129 0.000254 d.110.3.1 79714 2vlgA 111 0.000341 1mc0A 368 0.01394 d.110.2.1,d.110.2.1 78937,78938 2p7jA 287 0.05425 d.110.6.2,d.110.6.2 149287,149288 1ztuA 341 0.05455 d.110.2.1,d.110.3.9 146024,146025 3c8cA 240 0.05800 3fosA 214 0.1022 3by9A 260 0.1285 3crkA 407 0.1784 2qhkA 174 0.5242 1oj5A 132 0.8420 d.110.3.8 93087 3hkxA 283 3.266 1vqoK 132 4.110 b.39.1.1 120372 3k6eA 156 4.724 3ebtA 132 5.365 d.17.4.9 158086 1whiA 122 6.084 b.39.1.1 24810 1p0zA 131 6.479 d.110.6.1 93882 2x7nC 132 7.254 1s5aA 150 8.160 d.17.4.10 98525 3fgyA 135 8.599 3f7sA 142 8.891 2rbbA 141 9.98 2q4aA 330 10.27 b.82.2.8 139839 1whi 122 10.75 3grdA 134 11.21 3by8A 142 11.36 d.110.6.1 155722 2dyuA 334 11.68 2uxyA 341 11.73 2fckA 181 11.89 d.108.1.1 133272 3bqxA 150 11.95 3ff2A 117 13.58 1l1oC 181 13.58 b.40.4.3 73480 3ighX 486 14.01 2zpmA 91 14.16 2w1rA 123 14.25 3id4A 93 15.33 3pcgM 238 16.47 b.3.6.1 22742 2fsrA 195 17.47 d.108.1.1 134036 3l48A 94 18.58 3id2A 90 24.25 1nwwA 149 25.87 d.17.4.8 86306 3ec9A 140 28.21 d.17.4.10 158092 1jg5A 83 28.49 d.205.1.1 66666 3kizA 394 30.53 3lm2A 226 30.73 3lqnA 150 32.25 1g0hA 252 35.12 e.7.1.1 60171 3f14A 112 35.84 1et0A 269 35.97 e.17.1.1 43289 3bc9A 599 36.53 1erzA 303 37.80 d.160.1.2 59498 3ddjA 296 38.02 d.37.1.1,d.37.1.1 157553,157554 3dnuA 440 38.43 3i7tA 149 39.09 2kl1A 94 39.60 2guiA 194 40.80 c.55.3.5 135737 1j53A 186 43.87 c.55.3.5 77076 1a9xB 379 44.52 c.8.3.1,c.23.16.1 30732,31409 3dxoA 121 46.41 d.17.4.19 157933 3id3A 89 49.56 3h51A 156 50.27 1a9xA 1058 51.14 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1yge 839 51.54 2essA 248 52.69 d.38.1.8,d.38.1.8 132346,132347 2z2mA 168 53.40 3kpbA 122 55.93 2eg2A 112 58.48 1uf5A 303 58.78 d.160.1.2 107808 1wgsA 133 60.27 b.34.13.3 114622 2drwA 363 60.54 e.3.1.1 131674 1nuiA 255 61.32 e.13.1.2,g.41.3.2 86194,86195 1oo0B 110 61.40 d.58.7.1 87183 1a58A 177 61.88 b.62.1.1 27495 3cloA 258 62.55 1ygeA 839 64.04 a.119.1.1,b.12.1.1 19234,23634 2kjkA 100 64.66 2v9yA 334 66.22 3ilvA 634 66.52 3huhA 152 66.55 3i1eA 90 67.66 3g0kA 148 67.86 1ci0A 228 68.11 b.45.1.1 25750 1dnlA 199 68.82 b.45.1.1 25753 3b8lA 163 70.39 d.17.4.28 154955 1zkjA 359 71.40 1frb 315 71.61 3f8hA 150 72.73 3k0zA 159 75.68 2p9mA 138 76.34 2qdyA 207 76.46 d.149.1.1 150674 1f89A 291 78.33 d.160.1.1 64988 2zu1A 183 78.49 1ty9A 222 79.69 b.45.1.1 112827 1w0hA 204 79.77 c.55.3.5 114064 2zc3A 168 82.90 3ijpA 288 84.56 3gzrA 146 87.14 1cs0A 1073 88.95 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 3hhtA 216 89.59 2ownA 262 89.77 d.38.1.8,d.38.1.8 149045,149046