# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3lyxA 124 2.49e-20 2gj3A 120 3.46e-20 2v0uA 146 1.74e-19 2z6cA 129 1.02e-18 1p97A 114 3.87e-18 d.110.3.7 94382 2wkrA 332 4.49e-18 2pr5A 132 9.23e-18 2wkqA 332 9.88e-18 3ewkA 227 1.20e-17 1bywA 110 1.55e-17 d.110.3.6 40912 2wkpA 332 1.61e-17 3bwlA 126 1.69e-17 1ew0A 130 1.94e-17 d.110.3.2 40905 2b02A 119 2.01e-17 3f1pA 117 8.05e-17 1x0oA 119 9.60e-17 3eehA 125 1.65e-16 3gdiA 309 2.05e-16 1n9lA 109 3.08e-16 d.110.3.6 85468 3h9wA 115 3.63e-16 3f1pB 121 4.32e-16 3luqA 114 5.25e-16 1lswA 131 1.18e-15 d.110.3.2 78181 1xj4A 119 1.19e-15 d.110.3.2 122027 2vv6A 119 1.60e-15 1jnuA 104 2.64e-15 d.110.3.6 71762 3icyA 118 2.99e-15 2pd8A 149 1.42e-14 2pdrA 149 2.25e-14 3d72A 149 3.23e-14 3fc7A 125 1.67e-13 1v9yA 167 2.57e-13 d.110.3.2 108454 2veaA 520 4.31e-10 d.110.2.1,d.110.2.4,d.110.3.9 153022,153023,153024 3caxA 369 4.34e-10 1w25A 459 1.03e-09 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 3b33A 115 1.16e-07 2r78A 117 2.86e-07 2o9cA 342 4.43e-07 d.110.2.1,d.110.3.9 148684,148685 2oolA 337 2.62e-06 d.110.2.1,d.110.3.9 148932,148933 2jheA 190 2.01e-05 1ll8A 114 3.80e-05 d.110.3.5 78089 2qkpA 151 0.000319 3a0sA 96 0.000395 3a0vA 96 0.001358 1mc0A 368 0.003260 d.110.2.1,d.110.2.1 78937,78938 3pyp 125 0.005266 1nwzA 125 0.005490 d.110.3.1 86370 3fg8A 118 0.006709 1mzuA 129 0.008670 d.110.3.1 79714 2vlgA 111 0.01357 3crkA 407 0.02137 2p7jA 287 0.2106 d.110.6.2,d.110.6.2 149287,149288 3by9A 260 0.3481 1ztuA 341 0.3889 d.110.2.1,d.110.3.9 146024,146025 3fosA 214 0.3957 3c8cA 240 0.4661 2qhkA 174 4.562 1oj5A 132 6.166 d.110.3.8 93087 3ebtA 132 6.511 d.17.4.9 158086 2zpmA 91 8.484 1s5aA 150 8.509 d.17.4.10 98525 3bqxA 150 9.151 2fckA 181 10.18 d.108.1.1 133272 3f7sA 142 10.31 3grdA 134 10.56 3fgyA 135 10.82 2q4aA 330 12.84 b.82.2.8 139839 2rbbA 141 13.44 3f14A 112 15.79 3k6eA 156 17.93 1p0zA 131 18.33 d.110.6.1 93882 1nwwA 149 18.38 d.17.4.8 86306 3dm8A 143 18.77 d.17.4.20 157804 3id4A 93 19.47 3by8A 142 21.05 d.110.6.1 155722 3huhA 152 21.76 3id2A 90 23.06 3ighX 486 25.29 3ddjA 296 25.40 d.37.1.1,d.37.1.1 157553,157554 1vqoK 132 26.19 b.39.1.1 120372 3ff2A 117 29.40 2pvpA 367 30.64 2w1rA 123 31.52 2eg2A 112 31.58 3k0zA 159 36.61 3pcgM 238 36.62 b.3.6.1 22742 2uxyA 341 36.81 3i0pA 365 38.78 1whiA 122 41.50 b.39.1.1 24810 1whi 122 42.40 1jg5A 83 42.91 d.205.1.1 66666 1opy 131 44.65 1eo9A 209 45.16 b.3.6.1 22731 1s5uA 138 45.76 d.38.1.1 98573 2fsrA 195 46.18 d.108.1.1 134036 1l1oC 181 47.72 b.40.4.3 73480 3ey8A 133 54.06 3bzqA 114 54.68 3h51A 156 54.69 3lm2A 226 56.92 2ownA 262 59.53 d.38.1.8,d.38.1.8 149045,149046 3dxoA 121 61.19 d.17.4.19 157933 2bmxA 195 61.59 c.47.1.10 128817 3ec9A 140 63.32 d.17.4.10 158092 2essA 248 63.33 d.38.1.8,d.38.1.8 132346,132347 2zhpA 124 63.57 3kolA 156 63.72 1erzA 303 64.28 d.160.1.2 59498 2bngA 149 65.21 d.17.4.8 146156 3kizA 394 65.33 2pe8A 105 66.96 3hx8A 129 67.34 1dmmA 131 71.01 d.17.4.3 38114 3dnuA 440 76.50 2g2cA 167 77.68 c.57.1.1 134535 1f89A 291 77.85 d.160.1.1 64988 2x7nC 132 78.00 3lqnA 150 80.77 3gwrA 144 82.06 3i7tA 149 83.53 2kl1A 94 83.56 3k2nA 177 84.74 3id3A 89 85.65 2a15A 139 88.05 d.17.4.3 125973 3b8lA 163 88.25 d.17.4.28 154955 3fv6A 159 89.19