# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3lyxA 124 3.41e-20 2gj3A 120 5.55e-20 2v0uA 146 1.78e-19 2z6cA 129 1.36e-18 1p97A 114 3.66e-18 d.110.3.7 94382 2wkrA 332 3.68e-18 2wkqA 332 7.00e-18 2pr5A 132 1.10e-17 2wkpA 332 1.34e-17 3ewkA 227 1.54e-17 1bywA 110 1.98e-17 d.110.3.6 40912 3bwlA 126 2.06e-17 2b02A 119 2.90e-17 1ew0A 130 3.60e-17 d.110.3.2 40905 3f1pA 117 5.72e-17 1x0oA 119 1.31e-16 3eehA 125 1.34e-16 3gdiA 309 2.48e-16 1n9lA 109 2.55e-16 d.110.3.6 85468 3f1pB 121 5.52e-16 3h9wA 115 5.53e-16 3luqA 114 6.33e-16 1xj4A 119 1.45e-15 d.110.3.2 122027 2vv6A 119 2.31e-15 1lswA 131 2.38e-15 d.110.3.2 78181 1jnuA 104 2.41e-15 d.110.3.6 71762 3icyA 118 3.24e-15 2pd8A 149 1.58e-14 2pdrA 149 2.76e-14 3d72A 149 4.28e-14 3fc7A 125 1.66e-13 1v9yA 167 5.30e-13 d.110.3.2 108454 2veaA 520 4.32e-10 d.110.2.1,d.110.2.4,d.110.3.9 153022,153023,153024 3caxA 369 5.23e-10 1w25A 459 9.82e-10 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 3b33A 115 1.72e-07 2o9cA 342 4.76e-07 d.110.2.1,d.110.3.9 148684,148685 2r78A 117 6.18e-07 2oolA 337 2.44e-06 d.110.2.1,d.110.3.9 148932,148933 2jheA 190 2.29e-05 1ll8A 114 5.85e-05 d.110.3.5 78089 3a0sA 96 0.000314 2qkpA 151 0.000496 3a0vA 96 0.001433 3pyp 125 0.004285 1nwzA 125 0.004581 d.110.3.1 86370 1mc0A 368 0.004999 d.110.2.1,d.110.2.1 78937,78938 3fg8A 118 0.005511 1mzuA 129 0.01074 d.110.3.1 79714 2vlgA 111 0.02257 3crkA 407 0.02288 3by9A 260 0.4667 3fosA 214 0.5242 2p7jA 287 0.5570 d.110.6.2,d.110.6.2 149287,149288 3c8cA 240 0.6778 1ztuA 341 0.7993 d.110.2.1,d.110.3.9 146024,146025 2qhkA 174 6.527 2fckA 181 9.394 d.108.1.1 133272 1oj5A 132 11.32 d.110.3.8 93087 3bqxA 150 13.64 3dm8A 143 13.92 d.17.4.20 157804 1s5aA 150 13.96 d.17.4.10 98525 1p0zA 131 14.09 d.110.6.1 93882 2q4aA 330 14.17 b.82.2.8 139839 2zpmA 91 14.95 3f7sA 142 16.05 3ebtA 132 16.16 d.17.4.9 158086 3k6eA 156 16.41 3fgyA 135 16.83 3by8A 142 17.84 d.110.6.1 155722 3grdA 134 18.37 3ddjA 296 19.08 d.37.1.1,d.37.1.1 157553,157554 2rbbA 141 21.04 3ighX 486 21.22 2eg2A 112 25.14 3i0pA 365 30.55 1nwwA 149 30.82 d.17.4.8 86306 1l1oC 181 32.81 b.40.4.3 73480 3id4A 93 32.87 3bzqA 114 33.46 2w1rA 123 35.77 3huhA 152 37.17 2fsrA 195 37.25 d.108.1.1 134036 3f14A 112 37.53 2uxyA 341 38.89 3ff2A 117 41.25 2g2cA 167 42.62 c.57.1.1 134535 3id2A 90 44.89 3k0zA 159 48.67 1jg5A 83 50.38 d.205.1.1 66666 3kizA 394 51.00 2zhpA 124 54.24 1erzA 303 56.78 d.160.1.2 59498 3d6iA 112 60.81 3ec9A 140 61.62 d.17.4.10 158092 1hzpA 335 65.89 c.95.1.2,c.95.1.2 61455,61456 3i7tA 149 66.81 2pe8A 105 68.65 2o66A 135 70.82 3lqnA 150 74.54 3kpbA 122 75.13 1f89A 291 75.85 d.160.1.1 64988 2bmxA 195 76.44 c.47.1.10 128817 1vqoK 132 76.60 b.39.1.1 120372 1eo9A 209 77.36 b.3.6.1 22731 3ey8A 133 78.41 1prtA 234 81.38 d.166.1.1 42253 2ownA 262 83.85 d.38.1.8,d.38.1.8 149045,149046 1whiA 122 84.21 b.39.1.1 24810 1s5uA 138 86.22 d.38.1.1 98573 3kxrA 205 87.31 1et0A 269 88.67 e.17.1.1 43289 1ur3M 319 88.74 c.1.7.1 99806 3f9sA 146 89.44