# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gj3A 120 4.39e-20 3lyxA 124 4.45e-20 2v0uA 146 1.68e-19 2z6cA 129 9.22e-19 2wkrA 332 2.39e-18 1p97A 114 3.60e-18 d.110.3.7 94382 2wkqA 332 9.10e-18 2wkpA 332 9.31e-18 2pr5A 132 9.99e-18 3ewkA 227 1.35e-17 1bywA 110 1.95e-17 d.110.3.6 40912 3bwlA 126 2.22e-17 2b02A 119 2.88e-17 1ew0A 130 4.00e-17 d.110.3.2 40905 3f1pA 117 5.04e-17 1x0oA 119 1.12e-16 3eehA 125 1.47e-16 3gdiA 309 2.02e-16 1n9lA 109 2.08e-16 d.110.3.6 85468 3h9wA 115 4.36e-16 3f1pB 121 4.74e-16 3luqA 114 5.12e-16 1xj4A 119 1.70e-15 d.110.3.2 122027 1jnuA 104 1.96e-15 d.110.3.6 71762 1lswA 131 2.27e-15 d.110.3.2 78181 2vv6A 119 2.41e-15 3icyA 118 2.62e-15 2pd8A 149 1.60e-14 2pdrA 149 2.82e-14 3d72A 149 3.84e-14 3fc7A 125 1.82e-13 1v9yA 167 4.05e-13 d.110.3.2 108454 2veaA 520 3.93e-10 d.110.2.1,d.110.2.4,d.110.3.9 153022,153023,153024 3caxA 369 4.69e-10 1w25A 459 9.67e-10 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 3b33A 115 1.84e-07 2o9cA 342 5.04e-07 d.110.2.1,d.110.3.9 148684,148685 2r78A 117 5.99e-07 2oolA 337 2.32e-06 d.110.2.1,d.110.3.9 148932,148933 2jheA 190 2.23e-05 1ll8A 114 5.95e-05 d.110.3.5 78089 3a0sA 96 0.000409 2qkpA 151 0.000702 3a0vA 96 0.001837 1mc0A 368 0.004606 d.110.2.1,d.110.2.1 78937,78938 3pyp 125 0.005241 1nwzA 125 0.005245 d.110.3.1 86370 3fg8A 118 0.006811 1mzuA 129 0.01278 d.110.3.1 79714 2vlgA 111 0.02133 3crkA 407 0.02561 3by9A 260 0.5053 2p7jA 287 0.6364 d.110.6.2,d.110.6.2 149287,149288 3fosA 214 0.6783 3c8cA 240 0.6974 1ztuA 341 0.6994 d.110.2.1,d.110.3.9 146024,146025 2qhkA 174 8.125 2zpmA 91 10.78 3f7sA 142 11.24 2fckA 181 11.52 d.108.1.1 133272 2q4aA 330 13.72 b.82.2.8 139839 3bqxA 150 14.76 3by8A 142 16.65 d.110.6.1 155722 1s5aA 150 16.99 d.17.4.10 98525 1oj5A 132 17.44 d.110.3.8 93087 3ebtA 132 17.86 d.17.4.9 158086 1p0zA 131 18.69 d.110.6.1 93882 3dm8A 143 19.53 d.17.4.20 157804 3k6eA 156 21.24 3ddjA 296 21.42 d.37.1.1,d.37.1.1 157553,157554 2rbbA 141 22.59 3grdA 134 22.66 3fgyA 135 24.32 3ighX 486 24.46 1l1oC 181 24.81 b.40.4.3 73480 3id4A 93 25.83 2eg2A 112 26.93 2fsrA 195 33.78 d.108.1.1 134036 3f14A 112 34.26 2uxyA 341 34.57 3bzqA 114 34.92 2w1rA 123 35.90 3huhA 152 38.94 3ff2A 117 41.12 1nwwA 149 41.18 d.17.4.8 86306 3i0pA 365 43.63 1jg5A 83 44.33 d.205.1.1 66666 3id2A 90 44.49 2g2cA 167 47.63 c.57.1.1 134535 1erzA 303 54.22 d.160.1.2 59498 1eo9A 209 59.36 b.3.6.1 22731 3d6iA 112 59.66 3kizA 394 65.51 2bmxA 195 65.58 c.47.1.10 128817 1vqoK 132 66.47 b.39.1.1 120372 2wd6A 349 68.93 3pcgM 238 70.50 b.3.6.1 22742 3k0zA 159 72.67 3ey8A 133 74.73 2o66A 135 75.99 2pe8A 105 76.31 1s5uA 138 78.06 d.38.1.1 98573 1gnkA 112 81.40 d.58.5.1 39073 2essA 248 81.48 d.38.1.8,d.38.1.8 132346,132347 1whi 122 84.66 1oo0B 110 85.73 d.58.7.1 87183 1prtA 234 86.64 d.166.1.1 42253 2kl1A 94 89.08 2pvpA 367 89.17 1hzpA 335 89.58 c.95.1.2,c.95.1.2 61455,61456