# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3lyxA 124 9.11e-20 2gj3A 120 2.22e-19 2v0uA 146 7.12e-19 2z6cA 129 7.13e-18 2wkqA 332 9.85e-18 2wkrA 332 1.06e-17 2wkpA 332 1.84e-17 1p97A 114 2.16e-17 d.110.3.7 94382 1ew0A 130 4.06e-17 d.110.3.2 40905 2pr5A 132 4.20e-17 3ewkA 227 7.43e-17 3bwlA 126 1.06e-16 1bywA 110 1.13e-16 d.110.3.6 40912 3f1pA 117 1.48e-16 2b02A 119 1.91e-16 1x0oA 119 3.16e-16 3eehA 125 5.08e-16 3h9wA 115 6.28e-16 1lswA 131 7.16e-16 d.110.3.2 78181 3f1pB 121 1.01e-15 1n9lA 109 1.66e-15 d.110.3.6 85468 1xj4A 119 2.33e-15 d.110.3.2 122027 2vv6A 119 4.79e-15 3luqA 114 5.40e-15 3gdiA 309 1.03e-14 1jnuA 104 1.12e-14 d.110.3.6 71762 2pd8A 149 4.83e-14 3d72A 149 5.56e-14 2pdrA 149 6.04e-14 3fc7A 125 3.42e-13 1v9yA 167 5.78e-13 d.110.3.2 108454 3icyA 118 6.64e-13 2veaA 520 1.07e-09 d.110.2.1,d.110.2.4,d.110.3.9 153022,153023,153024 3caxA 369 5.07e-09 1w25A 459 1.07e-08 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 2o9cA 342 3.61e-07 d.110.2.1,d.110.3.9 148684,148685 3b33A 115 8.45e-07 2r78A 117 1.53e-06 2oolA 337 5.62e-06 d.110.2.1,d.110.3.9 148932,148933 2jheA 190 0.000186 1ll8A 114 0.000239 d.110.3.5 78089 3a0sA 96 0.000447 3a0vA 96 0.001213 2qkpA 151 0.002272 2vlgA 111 0.002982 3fg8A 118 0.004323 1mc0A 368 0.008391 d.110.2.1,d.110.2.1 78937,78938 3pyp 125 0.01125 1nwzA 125 0.01436 d.110.3.1 86370 1mzuA 129 0.03144 d.110.3.1 79714 3crkA 407 0.08458 1ztuA 341 0.2091 d.110.2.1,d.110.3.9 146024,146025 3by9A 260 0.6030 2p7jA 287 0.6048 d.110.6.2,d.110.6.2 149287,149288 3c8cA 240 1.779 3fosA 214 2.954 3by8A 142 5.298 d.110.6.1 155722 3ddjA 296 10.67 d.37.1.1,d.37.1.1 157553,157554 1s5uA 138 11.14 d.38.1.1 98573 2fckA 181 12.05 d.108.1.1 133272 2w1rA 123 13.19 2essA 248 16.01 d.38.1.8,d.38.1.8 132346,132347 1p0zA 131 17.02 d.110.6.1 93882 2z2mA 168 18.59 3ezuA 342 21.30 1j53A 186 21.45 c.55.3.5 77076 1vqoK 132 23.83 b.39.1.1 120372 3k6eA 156 23.83 1l1oC 181 26.64 b.40.4.3 73480 1a9xB 379 27.70 c.8.3.1,c.23.16.1 30732,31409 2guiA 194 29.31 c.55.3.5 135737 3ff2A 117 32.38 2x7nC 132 37.02 2zc3A 168 37.10 2ownA 262 42.12 d.38.1.8,d.38.1.8 149045,149046 2pii 112 44.71 2fsrA 195 45.68 d.108.1.1 134036 3i7tA 149 48.41 3grdA 134 49.27 1jg5A 83 51.48 d.205.1.1 66666 2v9yA 334 54.37 3f14A 112 56.39 1nuyA 337 56.78 e.7.1.1 86213 1zq1A 438 58.96 b.38.3.1,c.88.1.1 125489,125490 3kizA 394 60.95 3lqnA 150 61.23 3id2A 90 61.30 2o66A 135 63.13 2p08A 115 64.22 2eg2A 112 65.17 3huhA 152 65.36 1nwwA 149 65.87 d.17.4.8 86306 2cz4A 119 65.91 d.58.5.1 131035 2ie7A 318 66.95 a.65.1.1 137293 2v4iA 173 71.61 1whi 122 72.18 2q4aA 330 73.60 b.82.2.8 139839 3id4A 93 75.53 1whiA 122 76.62 b.39.1.1 24810 2vzkA 173 77.40 2hbtA 247 77.58 3gtzA 124 79.10 3fkaA 120 80.07 1hw6A 278 81.54 c.1.7.1 61296 1et0A 269 86.06 e.17.1.1 43289 2i3fA 224 86.46 2dyuA 334 89.25 1vfjA 116 89.69 d.58.5.1 113637