# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3lyxA 124 1.94e-19 2gj3A 120 4.67e-19 2v0uA 146 8.99e-19 2z6cA 129 6.56e-18 1p97A 114 3.18e-17 d.110.3.7 94382 2wkrA 332 4.51e-17 2pr5A 132 8.30e-17 3ewkA 227 8.48e-17 1bywA 110 9.11e-17 d.110.3.6 40912 2wkpA 332 9.22e-17 2b02A 119 1.06e-16 2wkqA 332 2.09e-16 3bwlA 126 2.18e-16 3f1pA 117 3.47e-16 1ew0A 130 4.02e-16 d.110.3.2 40905 3gdiA 309 7.93e-16 1x0oA 119 1.01e-15 1n9lA 109 1.11e-15 d.110.3.6 85468 3f1pB 121 1.55e-15 3h9wA 115 2.25e-15 3eehA 125 2.87e-15 1lswA 131 3.03e-15 d.110.3.2 78181 1xj4A 119 5.08e-15 d.110.3.2 122027 2vv6A 119 7.18e-15 1jnuA 104 1.06e-14 d.110.3.6 71762 3icyA 118 1.24e-14 3luqA 114 1.47e-14 2pd8A 149 9.07e-14 2pdrA 149 9.39e-14 3d72A 149 1.56e-13 1v9yA 167 7.95e-13 d.110.3.2 108454 3fc7A 125 1.46e-12 2veaA 520 9.88e-10 d.110.2.1,d.110.2.4,d.110.3.9 153022,153023,153024 3caxA 369 1.05e-09 1w25A 459 1.40e-08 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 3b33A 115 1.30e-07 2r78A 117 2.10e-07 2o9cA 342 4.43e-07 d.110.2.1,d.110.3.9 148684,148685 2oolA 337 2.89e-06 d.110.2.1,d.110.3.9 148932,148933 2jheA 190 3.05e-05 1ll8A 114 3.39e-05 d.110.3.5 78089 2qkpA 151 0.000175 3a0sA 96 0.000300 3a0vA 96 0.001119 1nwzA 125 0.003711 d.110.3.1 86370 3pyp 125 0.003928 2vlgA 111 0.006692 3fg8A 118 0.006760 1mc0A 368 0.009436 d.110.2.1,d.110.2.1 78937,78938 1mzuA 129 0.01136 d.110.3.1 79714 2p7jA 287 0.1783 d.110.6.2,d.110.6.2 149287,149288 3crkA 407 0.1956 3by9A 260 0.1990 1ztuA 341 0.2441 d.110.2.1,d.110.3.9 146024,146025 3fosA 214 0.5872 3c8cA 240 1.514 1p0zA 131 4.857 d.110.6.1 93882 3bqxA 150 5.013 1oj5A 132 6.782 d.110.3.8 93087 3by8A 142 8.110 d.110.6.1 155722 2qhkA 174 8.559 3k6eA 156 8.672 2w1rA 123 10.04 2fckA 181 10.51 d.108.1.1 133272 2q4aA 330 11.69 b.82.2.8 139839 1vqoK 132 12.35 b.39.1.1 120372 2rbbA 141 14.25 1s5aA 150 14.30 d.17.4.10 98525 3ebtA 132 14.97 d.17.4.9 158086 2essA 248 17.49 d.38.1.8,d.38.1.8 132346,132347 1whiA 122 20.02 b.39.1.1 24810 3grdA 134 20.15 3id4A 93 20.24 3pcgM 238 21.22 b.3.6.1 22742 2zpmA 91 21.67 3huhA 152 21.98 2pvpA 367 25.45 3id2A 90 26.28 3f7sA 142 27.85 3h51A 156 27.91 3ddjA 296 28.16 d.37.1.1,d.37.1.1 157553,157554 2fsrA 195 31.84 d.108.1.1 134036 1s5uA 138 32.15 d.38.1.1 98573 2x7nC 132 33.87 1whi 122 34.18 1l1oC 181 34.98 b.40.4.3 73480 3fgyA 135 36.82 1jg5A 83 36.99 d.205.1.1 66666 3ighX 486 37.76 3d6iA 112 39.54 2uxyA 341 40.45 3ff2A 117 42.18 1eo9A 209 43.08 b.3.6.1 22731 2eg2A 112 43.91 3dxoA 121 44.80 d.17.4.19 157933 2ownA 262 45.51 d.38.1.8,d.38.1.8 149045,149046 3f14A 112 45.68 1et0A 269 45.93 e.17.1.1 43289 3dnuA 440 49.06 2pe8A 105 52.18 1nwwA 149 54.84 d.17.4.8 86306 3ec9A 140 55.54 d.17.4.10 158092 1opy 131 56.00 3by4A 212 58.45 3kpbA 122 59.68 2bmxA 195 67.05 c.47.1.10 128817 1f89A 291 67.98 d.160.1.1 64988 1erzA 303 71.71 d.160.1.2 59498 3hnxA 110 76.63 3kolA 156 77.25 2zhpA 124 80.31 2dyuA 334 81.46 3ezuA 342 82.59 3lm2A 226 85.17 3hkxA 283 85.42 1bylA 125 85.96 d.32.1.2 38495 1rypD 241 88.11 d.153.1.4 41935 3b8lA 163 89.18 d.17.4.28 154955 3k0zA 159 89.25 3kizA 394 89.64