# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3lyxA 124 1.19e-22 2z6cA 129 9.30e-22 2v0uA 146 2.97e-21 2gj3A 120 3.66e-21 2wkrA 332 3.77e-21 2wkqA 332 2.38e-20 2wkpA 332 3.17e-20 3bwlA 126 2.20e-19 1p97A 114 2.21e-19 d.110.3.7 94382 3eehA 125 2.96e-19 2pr5A 132 3.32e-19 1bywA 110 6.23e-19 d.110.3.6 40912 2b02A 119 1.11e-18 3f1pA 117 2.06e-18 3ewkA 227 2.20e-18 1ew0A 130 3.54e-18 d.110.3.2 40905 1n9lA 109 6.12e-18 d.110.3.6 85468 1x0oA 119 1.37e-17 3h9wA 115 1.38e-17 3gdiA 309 2.14e-17 3f1pB 121 2.46e-17 1xj4A 119 3.11e-17 d.110.3.2 122027 1lswA 131 4.09e-17 d.110.3.2 78181 1jnuA 104 8.91e-17 d.110.3.6 71762 3luqA 114 1.16e-16 2pdrA 149 1.18e-16 3icyA 118 1.50e-16 2vv6A 119 1.69e-16 2pd8A 149 7.18e-16 3d72A 149 1.17e-15 3fc7A 125 2.50e-15 1v9yA 167 2.73e-14 d.110.3.2 108454 3caxA 369 3.26e-11 1w25A 459 2.13e-10 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 2r78A 117 5.70e-09 3b33A 115 3.49e-08 2o9cA 342 7.51e-08 d.110.2.1,d.110.3.9 148684,148685 2veaA 520 8.18e-08 d.110.2.1,d.110.2.4,d.110.3.9 153022,153023,153024 2qkpA 151 1.16e-05 1ll8A 114 7.67e-05 d.110.3.5 78089 3a0sA 96 0.000120 2jheA 190 0.000164 3a0vA 96 0.000588 2oolA 337 0.001079 d.110.2.1,d.110.3.9 148932,148933 3pyp 125 0.002154 1nwzA 125 0.002170 d.110.3.1 86370 3fg8A 118 0.002258 2vlgA 111 0.005840 1mzuA 129 0.007695 d.110.3.1 79714 2p7jA 287 0.01510 d.110.6.2,d.110.6.2 149287,149288 3fosA 214 0.2701 1mc0A 368 0.2802 d.110.2.1,d.110.2.1 78937,78938 1ztuA 341 0.3118 d.110.2.1,d.110.3.9 146024,146025 3crkA 407 0.3947 3c8cA 240 0.4929 3by9A 260 1.438 1p0zA 131 1.551 d.110.6.1 93882 3by8A 142 2.455 d.110.6.1 155722 1oj5A 132 3.376 d.110.3.8 93087 3ff2A 117 4.011 2qhkA 174 4.022 2gf3A 389 5.044 c.3.1.2,d.16.1.3 135070,135071 3h74A 282 5.591 2eg2A 112 6.293 2q4aA 330 6.602 b.82.2.8 139839 3b59A 310 7.807 3ebtA 132 8.230 d.17.4.9 158086 1tuhA 156 9.140 d.17.4.11 107345 3f7sA 142 9.766 2fckA 181 10.84 d.108.1.1 133272 3id4A 93 10.94 3f9sA 146 11.21 2ownA 262 11.50 d.38.1.8,d.38.1.8 149045,149046 3id3A 89 12.11 3dm8A 143 13.62 d.17.4.20 157804 3cloA 258 13.67 1l1oC 181 14.19 b.40.4.3 73480 3id2A 90 14.48 2v9yA 334 15.44 3fgyA 135 15.78 3b8lA 163 16.18 d.17.4.28 154955 3g0kA 148 16.46 2dyuA 334 17.19 1nwwA 149 17.62 d.17.4.8 86306 2v74B 346 17.74 3kizA 394 18.40 1q6zA 528 19.26 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 2w1rA 123 19.39 3feqA 423 20.20 3ddjA 296 21.69 d.37.1.1,d.37.1.1 157553,157554 3huhA 152 22.73 3k0zA 159 23.02 3grdA 134 23.44 1snlA 103 23.99 a.39.1.7 105820 3ec9A 140 24.39 d.17.4.10 158092 2zpmA 91 25.08 3ezuA 342 25.90 3ighX 486 25.95 3c96A 415 26.57 c.3.1.2,d.16.1.2 156122,156123 3kolA 156 27.86 1esjA 284 28.24 c.72.1.2 34943 1vqoK 132 28.59 b.39.1.1 120372 3exvA 213 31.62 1u0tA 307 32.03 e.52.1.1 107567 3d6iA 112 33.10 3h51A 156 34.38 3f14A 112 35.25 3bh4A 483 35.91 2nujA 163 36.90 d.38.1.1 138608 2rbbA 141 37.51 2i2cA 272 37.64 3bqxA 150 38.08 3eaaA 163 41.91 1iq6A 134 41.92 d.38.1.4 76755 2egxA 269 42.38 3gwrA 144 42.75 1yw4A 341 43.63 c.56.5.7 124131 1et0A 269 43.76 e.17.1.1 43289 7odcA 424 43.90 b.49.2.3,c.1.6.1 26488,28650 3bzqA 114 46.10 1bylA 125 47.92 d.32.1.2 38495 3eebA 209 48.01 3gzrA 146 48.05 1jg5A 83 48.12 d.205.1.1 66666 1s5uA 138 48.53 d.38.1.1 98573 2wd6A 349 49.91 3e29A 144 50.05 1eo9A 209 50.39 b.3.6.1 22731 3dnuA 440 50.88 3f0yA 208 50.90 1dyoA 160 52.82 b.18.1.7 23771 1y0zA 330 54.58 b.82.2.8 116317 3huuA 305 55.42 3ey8A 133 55.72 1j96A 323 56.86 c.1.7.1 71616 1wlgA 299 58.13 b.152.1.1 114726 1c24A 263 58.33 d.127.1.1 41148 3kxrA 205 58.43 3cu3A 172 58.67 d.17.4.28 156988 1whiA 122 59.26 b.39.1.1 24810 3by4A 212 60.22 3hnxA 110 60.42 2zhpA 124 61.74 3dxoA 121 63.05 d.17.4.19 157933 2b06A 155 64.05 d.113.1.1 127624 1on0A 158 64.54 d.108.1.1 87095 1dv2A 452 64.55 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 1s9aA 257 65.51 b.3.6.1 105379 2icgA 160 65.58 d.369.1.1 147601 2bngA 149 66.07 d.17.4.8 146156 1ed8A 449 66.12 c.76.1.1 34988 2pvpA 367 69.64 2essA 248 69.78 d.38.1.8,d.38.1.8 132346,132347 1whi 122 70.13 3buuA 229 70.24 3hwrA 318 70.43 1s1pA 331 70.98 c.1.7.1 98350 2geyA 158 71.47 d.17.4.9 147114 2bonA 332 71.61 e.52.1.2 146163 1qxyA 252 72.18 d.127.1.1 96565 1rk8A 165 72.26 d.58.7.1 97603 1vr9A 213 72.83 d.37.1.1 144433 1s68A 249 75.49 d.142.2.4 98591 1l9cA 389 77.55 c.3.1.2,d.16.1.3 77815,77816 3ghjA 141 77.78 2ehzA 302 79.68 1yw1A 442 80.99 c.1.16.4 124130 2fa1A 160 81.01 d.190.1.2 133182 2uz1A 563 81.38 2o0yA 260 81.54 2o66A 135 81.67 2vh1A 220 82.39 2bmxA 195 84.58 c.47.1.10 128817 1y9qA 192 85.59 a.35.1.8,b.82.1.15 116592,116593 1nslA 184 86.54 d.108.1.1 86137 1nbaA 264 87.29 c.33.1.3 31753 3k6eA 156 87.32 3h15A 198 88.20 2k54A 123 88.22 d.17.4.29 148271 3h3hA 122 88.36 2gnpA 266 89.38 c.124.1.8 147139