# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3lyxA 124 2.31e-19 2v0uA 146 4.67e-19 2gj3A 120 6.09e-19 2z6cA 129 4.58e-18 2wkrA 332 1.52e-17 1p97A 114 2.63e-17 d.110.3.7 94382 2wkqA 332 3.57e-17 2pr5A 132 3.85e-17 2wkpA 332 4.81e-17 3ewkA 227 7.98e-17 1bywA 110 8.72e-17 d.110.3.6 40912 2b02A 119 1.14e-16 3bwlA 126 3.21e-16 1ew0A 130 3.55e-16 d.110.3.2 40905 3f1pA 117 5.28e-16 1x0oA 119 7.40e-16 3gdiA 309 7.54e-16 1n9lA 109 1.22e-15 d.110.3.6 85468 3f1pB 121 1.75e-15 3eehA 125 2.14e-15 3h9wA 115 2.23e-15 1lswA 131 2.51e-15 d.110.3.2 78181 1xj4A 119 4.55e-15 d.110.3.2 122027 2vv6A 119 6.83e-15 3luqA 114 9.52e-15 1jnuA 104 1.03e-14 d.110.3.6 71762 3icyA 118 1.29e-14 2pd8A 149 4.12e-14 2pdrA 149 5.98e-14 3d72A 149 9.35e-14 3fc7A 125 8.54e-13 1v9yA 167 1.35e-12 d.110.3.2 108454 2veaA 520 7.36e-10 d.110.2.1,d.110.2.4,d.110.3.9 153022,153023,153024 3caxA 369 1.53e-09 1w25A 459 2.05e-09 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 3b33A 115 2.15e-07 2o9cA 342 5.94e-07 d.110.2.1,d.110.3.9 148684,148685 2r78A 117 8.30e-07 2oolA 337 1.69e-06 d.110.2.1,d.110.3.9 148932,148933 2jheA 190 4.02e-05 1ll8A 114 5.64e-05 d.110.3.5 78089 3a0sA 96 0.000309 2qkpA 151 0.000716 3a0vA 96 0.001386 3fg8A 118 0.006006 3pyp 125 0.008034 1nwzA 125 0.008588 d.110.3.1 86370 1mc0A 368 0.01312 d.110.2.1,d.110.2.1 78937,78938 2vlgA 111 0.01702 1mzuA 129 0.02120 d.110.3.1 79714 3crkA 407 0.05875 3by9A 260 0.3906 1ztuA 341 0.4596 d.110.2.1,d.110.3.9 146024,146025 2p7jA 287 0.8821 d.110.6.2,d.110.6.2 149287,149288 3c8cA 240 1.605 3fosA 214 1.617 1oj5A 132 6.810 d.110.3.8 93087 1p0zA 131 7.322 d.110.6.1 93882 3bqxA 150 7.904 2q4aA 330 9.374 b.82.2.8 139839 3by8A 142 11.73 d.110.6.1 155722 2fckA 181 19.39 d.108.1.1 133272 2rbbA 141 21.22 2qhkA 174 21.43 2essA 248 22.06 d.38.1.8,d.38.1.8 132346,132347 3f7sA 142 22.34 1s5aA 150 22.45 d.17.4.10 98525 3k6eA 156 23.20 1l1oC 181 23.37 b.40.4.3 73480 3ddjA 296 24.66 d.37.1.1,d.37.1.1 157553,157554 2zpmA 91 27.66 3ff2A 117 29.72 2w1rA 123 30.75 1s5uA 138 30.83 d.38.1.1 98573 3d6iA 112 34.73 3id4A 93 34.81 1nwwA 149 36.38 d.17.4.8 86306 1et0A 269 36.66 e.17.1.1 43289 2eg2A 112 38.09 2fsrA 195 39.79 d.108.1.1 134036 3fgyA 135 40.77 3pcgM 238 41.70 b.3.6.1 22742 1vqoK 132 41.97 b.39.1.1 120372 3ighX 486 42.36 3huhA 152 42.41 3dm8A 143 42.63 d.17.4.20 157804 3id2A 90 42.81 3kizA 394 43.50 3ebtA 132 43.63 d.17.4.9 158086 1jg5A 83 50.51 d.205.1.1 66666 3ezuA 342 52.50 3grdA 134 56.13 3by4A 212 56.33 3h51A 156 56.92 3ec9A 140 58.56 d.17.4.10 158092 2bmxA 195 58.83 c.47.1.10 128817 2pe8A 105 59.19 2pvpA 367 61.63 2ownA 262 62.99 d.38.1.8,d.38.1.8 149045,149046 1eo9A 209 68.82 b.3.6.1 22731 1bylA 125 74.20 d.32.1.2 38495 1whiA 122 75.38 b.39.1.1 24810 1hzpA 335 78.59 c.95.1.2,c.95.1.2 61455,61456 3k0zA 159 79.43 2uxyA 341 81.41 2x7nC 132 85.88 3h74A 282 87.68 2ebnA 289 88.49 c.1.8.5 28990