# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3lyxA 124 1.24e-19 2gj3A 120 3.09e-19 2v0uA 146 5.18e-19 2z6cA 129 1.96e-18 1p97A 114 5.54e-18 d.110.3.7 94382 2wkrA 332 2.15e-17 2pr5A 132 2.56e-17 2wkqA 332 3.80e-17 2wkpA 332 5.49e-17 3ewkA 227 6.21e-17 2b02A 119 6.39e-17 1bywA 110 6.72e-17 d.110.3.6 40912 3bwlA 126 1.48e-16 1ew0A 130 1.59e-16 d.110.3.2 40905 3f1pA 117 1.94e-16 1x0oA 119 2.36e-16 3gdiA 309 3.78e-16 3eehA 125 4.47e-16 1n9lA 109 7.07e-16 d.110.3.6 85468 3h9wA 115 7.26e-16 3f1pB 121 8.92e-16 1lswA 131 2.10e-15 d.110.3.2 78181 3luqA 114 2.53e-15 1xj4A 119 2.89e-15 d.110.3.2 122027 3icyA 118 5.42e-15 2vv6A 119 5.65e-15 1jnuA 104 5.72e-15 d.110.3.6 71762 2pd8A 149 5.52e-14 2pdrA 149 7.19e-14 3d72A 149 1.28e-13 3fc7A 125 9.04e-13 1v9yA 167 2.06e-12 d.110.3.2 108454 2veaA 520 5.32e-10 d.110.2.1,d.110.2.4,d.110.3.9 153022,153023,153024 3caxA 369 8.81e-10 1w25A 459 3.50e-09 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 3b33A 115 2.00e-07 2o9cA 342 6.98e-07 d.110.2.1,d.110.3.9 148684,148685 2r78A 117 8.39e-07 2oolA 337 2.26e-06 d.110.2.1,d.110.3.9 148932,148933 2jheA 190 4.00e-05 1ll8A 114 6.91e-05 d.110.3.5 78089 3a0sA 96 0.000466 2qkpA 151 0.000882 3a0vA 96 0.001424 1mc0A 368 0.01029 d.110.2.1,d.110.2.1 78937,78938 1mzuA 129 0.02455 d.110.3.1 79714 1nwzA 125 0.02460 d.110.3.1 86370 3pyp 125 0.02460 3crkA 407 0.03472 2vlgA 111 0.03808 3fg8A 118 0.05670 3by9A 260 0.5522 1ztuA 341 0.7411 d.110.2.1,d.110.3.9 146024,146025 2p7jA 287 0.7504 d.110.6.2,d.110.6.2 149287,149288 3c8cA 240 0.9443 3fosA 214 1.428 1oj5A 132 5.310 d.110.3.8 93087 3bqxA 150 6.481 2q4aA 330 7.394 b.82.2.8 139839 2zpmA 91 9.269 2qhkA 174 14.54 1l1oC 181 15.14 b.40.4.3 73480 3f7sA 142 16.40 1p0zA 131 16.86 d.110.6.1 93882 3ebtA 132 18.49 d.17.4.9 158086 3by8A 142 19.42 d.110.6.1 155722 3ff2A 117 20.57 3id4A 93 24.43 2rbbA 141 26.48 2uxyA 341 28.63 3k6eA 156 29.04 3id2A 90 29.29 3f14A 112 31.20 3fgyA 135 31.53 1nwwA 149 32.43 d.17.4.8 86306 2eg2A 112 34.07 3huhA 152 40.32 3grdA 134 40.94 1s5aA 150 46.13 d.17.4.10 98525 2w1rA 123 47.92 2fckA 181 49.06 d.108.1.1 133272 1erzA 303 49.06 d.160.1.2 59498 1et0A 269 49.31 e.17.1.1 43289 3ezuA 342 59.05 3bzqA 114 65.19 1eo9A 209 65.41 b.3.6.1 22731 2kl1A 94 65.57 1vqoK 132 66.40 b.39.1.1 120372 2essA 248 66.72 d.38.1.8,d.38.1.8 132346,132347 2bmxA 195 67.40 c.47.1.10 128817 1jg5A 83 68.09 d.205.1.1 66666 1f89A 291 70.89 d.160.1.1 64988 3ddjA 296 71.07 d.37.1.1,d.37.1.1 157553,157554 1j34B 123 73.67 d.169.1.1 84049 3id3A 89 73.81 2zhpA 124 74.92 1uf5A 303 76.02 d.160.1.2 107808 3pcgM 238 79.00 b.3.6.1 22742 3i7tA 149 80.76 3k0zA 159 81.03 1opy 131 88.05 1bylA 125 88.86 d.32.1.2 38495 2o66A 135 88.91