# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3lyxA 124 4.09e-20 2gj3A 120 1.20e-19 2v0uA 146 3.81e-19 2z6cA 129 1.12e-18 1p97A 114 3.06e-18 d.110.3.7 94382 2pr5A 132 1.40e-17 2wkrA 332 1.98e-17 3ewkA 227 2.25e-17 2b02A 119 2.51e-17 2wkqA 332 3.00e-17 1bywA 110 4.10e-17 d.110.3.6 40912 2wkpA 332 4.46e-17 3bwlA 126 4.64e-17 3f1pA 117 5.41e-17 3gdiA 309 9.35e-17 1ew0A 130 1.01e-16 d.110.3.2 40905 1x0oA 119 1.18e-16 3eehA 125 1.51e-16 1n9lA 109 2.58e-16 d.110.3.6 85468 3h9wA 115 2.91e-16 3f1pB 121 3.22e-16 1lswA 131 8.13e-16 d.110.3.2 78181 3luqA 114 1.02e-15 1xj4A 119 1.14e-15 d.110.3.2 122027 1jnuA 104 1.91e-15 d.110.3.6 71762 2vv6A 119 2.48e-15 3icyA 118 3.15e-15 2pd8A 149 3.94e-14 2pdrA 149 6.11e-14 3d72A 149 7.62e-14 1v9yA 167 4.68e-13 d.110.3.2 108454 3fc7A 125 6.81e-13 2veaA 520 8.14e-10 d.110.2.1,d.110.2.4,d.110.3.9 153022,153023,153024 3caxA 369 1.34e-09 1w25A 459 8.01e-09 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 3b33A 115 8.37e-08 2r78A 117 3.99e-07 2o9cA 342 4.45e-07 d.110.2.1,d.110.3.9 148684,148685 2oolA 337 7.32e-07 d.110.2.1,d.110.3.9 148932,148933 2jheA 190 3.45e-05 1ll8A 114 3.96e-05 d.110.3.5 78089 3a0sA 96 0.000449 2qkpA 151 0.000895 3a0vA 96 0.001463 3pyp 125 0.007264 1nwzA 125 0.008003 d.110.3.1 86370 1mc0A 368 0.01107 d.110.2.1,d.110.2.1 78937,78938 1mzuA 129 0.01130 d.110.3.1 79714 2vlgA 111 0.01147 3fg8A 118 0.01231 3crkA 407 0.05428 3by9A 260 0.4378 3c8cA 240 0.4794 1ztuA 341 0.6162 d.110.2.1,d.110.3.9 146024,146025 2p7jA 287 0.6799 d.110.6.2,d.110.6.2 149287,149288 3fosA 214 0.6831 3bqxA 150 4.172 1oj5A 132 4.514 d.110.3.8 93087 2qhkA 174 6.904 2q4aA 330 7.716 b.82.2.8 139839 1vqoK 132 10.18 b.39.1.1 120372 1l1oC 181 12.01 b.40.4.3 73480 3ebtA 132 14.02 d.17.4.9 158086 2zpmA 91 16.19 1s5aA 150 16.20 d.17.4.10 98525 3f7sA 142 17.70 3ff2A 117 18.54 2uxyA 341 20.12 2eg2A 112 20.16 3by8A 142 21.04 d.110.6.1 155722 2rbbA 141 21.36 1whiA 122 22.08 b.39.1.1 24810 3k6eA 156 25.80 3ddjA 296 26.91 d.37.1.1,d.37.1.1 157553,157554 3fgyA 135 30.64 3grdA 134 30.77 1et0A 269 30.81 e.17.1.1 43289 1whi 122 31.89 3id4A 93 32.80 1p0zA 131 33.05 d.110.6.1 93882 3ighX 486 33.89 2x7nC 132 34.39 1nwwA 149 39.82 d.17.4.8 86306 3id2A 90 39.96 2bmxA 195 41.21 c.47.1.10 128817 3f14A 112 43.21 1jg5A 83 43.76 d.205.1.1 66666 1erzA 303 45.13 d.160.1.2 59498 2essA 248 45.45 d.38.1.8,d.38.1.8 132346,132347 1uf5A 303 48.55 d.160.1.2 107808 2fckA 181 50.32 d.108.1.1 133272 3bzqA 114 51.07 3huhA 152 54.19 3kizA 394 54.47 2dyuA 334 54.51 3hkxA 283 57.15 3i7tA 149 61.25 3d6iA 112 64.81 2qdyA 207 67.78 d.149.1.1 150674 2w1rA 123 71.50 3ezuA 342 79.37 3id3A 89 79.98 3b8lA 163 81.70 d.17.4.28 154955 3ec9A 140 82.51 d.17.4.10 158092 2kl1A 94 83.34 3pcgM 238 84.19 b.3.6.1 22742 1a9xB 379 86.02 c.8.3.1,c.23.16.1 30732,31409