# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3lyxA 124 2.52e-20 2gj3A 120 6.16e-20 2v0uA 146 2.58e-19 2z6cA 129 5.70e-19 1p97A 114 2.02e-18 d.110.3.7 94382 2wkrA 332 7.29e-18 2wkqA 332 8.83e-18 2pr5A 132 1.03e-17 3ewkA 227 1.03e-17 2wkpA 332 1.34e-17 2b02A 119 1.96e-17 1bywA 110 2.47e-17 d.110.3.6 40912 3bwlA 126 2.83e-17 1ew0A 130 3.09e-17 d.110.3.2 40905 3f1pA 117 4.44e-17 3gdiA 309 1.06e-16 3eehA 125 1.12e-16 1x0oA 119 1.24e-16 1n9lA 109 1.44e-16 d.110.3.6 85468 3f1pB 121 2.32e-16 3h9wA 115 4.60e-16 1lswA 131 6.23e-16 d.110.3.2 78181 1xj4A 119 6.76e-16 d.110.3.2 122027 3luqA 114 8.70e-16 1jnuA 104 1.29e-15 d.110.3.6 71762 2vv6A 119 1.75e-15 3icyA 118 1.82e-15 2pd8A 149 1.79e-14 2pdrA 149 3.07e-14 3d72A 149 3.51e-14 1v9yA 167 2.78e-13 d.110.3.2 108454 3fc7A 125 4.65e-13 2veaA 520 2.64e-10 d.110.2.1,d.110.2.4,d.110.3.9 153022,153023,153024 3caxA 369 4.58e-10 1w25A 459 7.32e-09 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 3b33A 115 1.16e-07 2r78A 117 2.06e-07 2o9cA 342 2.61e-07 d.110.2.1,d.110.3.9 148684,148685 2oolA 337 5.94e-07 d.110.2.1,d.110.3.9 148932,148933 2jheA 190 2.17e-05 1ll8A 114 4.14e-05 d.110.3.5 78089 2qkpA 151 0.000160 3a0sA 96 0.000381 3a0vA 96 0.001038 1nwzA 125 0.002385 d.110.3.1 86370 3pyp 125 0.002452 1mzuA 129 0.003230 d.110.3.1 79714 1mc0A 368 0.007114 d.110.2.1,d.110.2.1 78937,78938 2vlgA 111 0.01045 3fg8A 118 0.01177 3crkA 407 0.05976 2p7jA 287 0.1743 d.110.6.2,d.110.6.2 149287,149288 3by9A 260 0.2339 1ztuA 341 0.2998 d.110.2.1,d.110.3.9 146024,146025 3c8cA 240 0.6280 3fosA 214 0.6324 1oj5A 132 4.809 d.110.3.8 93087 2q4aA 330 7.166 b.82.2.8 139839 3bqxA 150 7.885 1l1oC 181 9.225 b.40.4.3 73480 2zpmA 91 9.636 2qhkA 174 10.60 1vqoK 132 14.07 b.39.1.1 120372 3id4A 93 17.75 3f7sA 142 18.65 3ebtA 132 18.82 d.17.4.9 158086 3by8A 142 19.33 d.110.6.1 155722 1p0zA 131 21.65 d.110.6.1 93882 2eg2A 112 22.19 3pcgM 238 22.37 b.3.6.1 22742 1nwwA 149 22.69 d.17.4.8 86306 2x7nC 132 23.23 3id2A 90 25.13 3k6eA 156 25.94 3ff2A 117 26.02 1whiA 122 26.30 b.39.1.1 24810 3fgyA 135 26.55 2rbbA 141 27.00 3ddjA 296 31.01 d.37.1.1,d.37.1.1 157553,157554 1s5aA 150 32.24 d.17.4.10 98525 1whi 122 32.26 3huhA 152 35.89 3grdA 134 36.27 2w1rA 123 37.14 2uxyA 341 39.53 1erzA 303 40.04 d.160.1.2 59498 3f14A 112 42.76 3ighX 486 44.40 1et0A 269 45.48 e.17.1.1 43289 1uf5A 303 48.17 d.160.1.2 107808 1jg5A 83 48.21 d.205.1.1 66666 2fckA 181 48.22 d.108.1.1 133272 3bzqA 114 53.18 2bmxA 195 53.37 c.47.1.10 128817 2essA 248 59.61 d.38.1.8,d.38.1.8 132346,132347 3ezuA 342 59.69 2kl1A 94 60.28 3id3A 89 61.98 1f89A 291 62.02 d.160.1.1 64988 3i7tA 149 63.96 2g2cA 167 64.89 c.57.1.1 134535 2pvpA 367 66.19 1opy 131 68.69 1eo9A 209 70.06 b.3.6.1 22731 1a9xB 379 70.48 c.8.3.1,c.23.16.1 30732,31409 2zhpA 124 73.51 3kizA 394 74.14 3gzrA 146 76.02 3cloA 258 78.32 1dmmA 131 82.20 d.17.4.3 38114 1ur3M 319 83.26 c.1.7.1 99806 3k0zA 159 83.40 3hkxA 283 83.92 3lm2A 226 84.92 1oo0B 110 88.22 d.58.7.1 87183 3b47A 134 88.79