# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2v0uA	146	7.48e-22		
2wkqA	332	2.28e-21		
2wkrA	332	3.76e-21		
2gj3A	120	3.83e-21		
3lyxA	124	1.15e-20		
2wkpA	332	1.43e-20		
1p97A	114	3.06e-20	d.110.3.7	94382
1bywA	110	2.31e-19	d.110.3.6	40912
2z6cA	129	2.77e-19		
2pr5A	132	2.93e-19		
3ewkA	227	8.19e-19		
1ew0A	130	2.65e-18	d.110.3.2	40905
1x0oA	119	2.87e-18		
3f1pA	117	4.24e-18		
3eehA	125	9.40e-18		
2b02A	119	9.75e-18		
1lswA	131	2.30e-17	d.110.3.2	78181
3bwlA	126	2.56e-17		
1n9lA	109	2.67e-17	d.110.3.6	85468
3h9wA	115	3.60e-17		
3f1pB	121	4.72e-17		
3luqA	114	7.12e-17		
3gdiA	309	1.11e-16		
2pd8A	149	1.57e-16		
1xj4A	119	1.58e-16	d.110.3.2	122027
2vv6A	119	2.14e-16		
2pdrA	149	2.18e-16		
3d72A	149	5.28e-16		
1jnuA	104	1.21e-15	d.110.3.6	71762
3fc7A	125	2.13e-14		
1v9yA	167	1.36e-13	d.110.3.2	108454
3icyA	118	1.38e-12		
2veaA	520	7.87e-12	d.110.2.1,d.110.2.4,d.110.3.9	153022,153023,153024
1w25A	459	8.46e-10	c.23.1.1,c.23.1.1,d.58.29.2	114090,114091,114092
3caxA	369	3.36e-09		
2o9cA	342	1.04e-08	d.110.2.1,d.110.3.9	148684,148685
3b33A	115	2.70e-07		
2oolA	337	1.48e-06	d.110.2.1,d.110.3.9	148932,148933
2r78A	117	3.00e-06		
1ll8A	114	2.84e-05	d.110.3.5	78089
1mc0A	368	0.000479	d.110.2.1,d.110.2.1	78937,78938
3a0sA	96	0.000520		
2jheA	190	0.000935		
3a0vA	96	0.002280		
1ztuA	341	0.008070	d.110.2.1,d.110.3.9	146024,146025
1nwzA	125	0.02371	d.110.3.1	86370
2vlgA	111	0.03637		
2qkpA	151	0.04354		
3pyp	125	0.04612		
2p7jA	287	0.04836	d.110.6.2,d.110.6.2	149287,149288
3crkA	407	0.08390		
3fg8A	118	0.1137		
3c8cA	240	0.2288		
1mzuA	129	0.4183	d.110.3.1	79714
3by9A	260	0.5023		
3fosA	214	4.319		
3by8A	142	4.858	d.110.6.1	155722
3ddjA	296	5.485	d.37.1.1,d.37.1.1	157553,157554
1p0zA	131	7.320	d.110.6.1	93882
2fckA	181	9.179	d.108.1.1	133272
1l1oC	181	11.62	b.40.4.3	73480
1s5uA	138	13.35	d.38.1.1	98573
3ezuA	342	15.63		
3k6eA	156	25.99		
3k2nA	177	26.54		
3i7tA	149	31.22		
1nslA	184	32.41	d.108.1.1	86137
1nwwA	149	32.83	d.17.4.8	86306
2cbyA	208	33.28	c.14.1.1	130202
3ck1A	150	38.61		
3gtzA	124	40.79		
3ff2A	117	47.96		
2gx5A	170	48.70		
2pii	112	49.43		
2w1rA	123	50.36		
2b18A	164	51.29		
2w3xA	147	52.94		
2cvlA	124	53.04	d.79.1.1	130871
2b33A	140	55.48	d.79.1.1	127765
2a2lA	145	56.36	d.110.9.1	126035
1oniA	137	60.07	d.79.1.1	87144
1e8gA	560	65.33	d.58.32.1,d.145.1.1	39455,41718
1qd9A	124	67.49	d.79.1.1	39758
2q4aA	330	76.33	b.82.2.8	139839
2fsrA	195	76.67	d.108.1.1	134036
1mla	309	78.92		
2eg2A	112	83.99		
2o66A	135	84.67		
1qahA	136	87.16	d.79.1.1	96338
2vk3A	142	87.84		
2ns1B	116	88.44	d.58.5.1	145694