# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gj3A 120 2.21e-19 3lyxA 124 8.90e-19 2v0uA 146 1.46e-18 1p97A 114 6.20e-18 d.110.3.7 94382 2wkqA 332 9.44e-18 2z6cA 129 9.80e-18 2wkrA 332 1.83e-17 1bywA 110 2.00e-17 d.110.3.6 40912 2pr5A 132 2.99e-17 2wkpA 332 8.40e-17 3eehA 125 8.65e-17 3ewkA 227 1.25e-16 3bwlA 126 1.89e-16 1ew0A 130 3.14e-16 d.110.3.2 40905 2b02A 119 5.44e-16 1x0oA 119 1.10e-15 1lswA 131 1.18e-15 d.110.3.2 78181 3f1pA 117 1.23e-15 3gdiA 309 1.63e-15 3h9wA 115 1.94e-15 1n9lA 109 2.08e-15 d.110.3.6 85468 3f1pB 121 2.31e-15 2vv6A 119 4.04e-15 3luqA 114 5.48e-15 1xj4A 119 6.54e-15 d.110.3.2 122027 1jnuA 104 3.22e-14 d.110.3.6 71762 2pd8A 149 3.54e-14 2pdrA 149 3.96e-14 3d72A 149 1.06e-13 3fc7A 125 2.62e-13 3icyA 118 2.16e-12 1v9yA 167 1.07e-11 d.110.3.2 108454 1w25A 459 1.40e-09 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 2veaA 520 2.91e-09 d.110.2.1,d.110.2.4,d.110.3.9 153022,153023,153024 3caxA 369 3.91e-09 3b33A 115 2.44e-07 2r78A 117 3.79e-07 2o9cA 342 1.51e-06 d.110.2.1,d.110.3.9 148684,148685 1ll8A 114 5.60e-05 d.110.3.5 78089 2oolA 337 8.78e-05 d.110.2.1,d.110.3.9 148932,148933 2jheA 190 0.000158 3a0sA 96 0.000606 1mc0A 368 0.000673 d.110.2.1,d.110.2.1 78937,78938 3a0vA 96 0.002400 2qkpA 151 0.007138 2vlgA 111 0.03218 3fg8A 118 0.06667 1nwzA 125 0.1903 d.110.3.1 86370 3pyp 125 0.2113 1mzuA 129 0.3575 d.110.3.1 79714 3by9A 260 0.4616 1ztuA 341 0.5237 d.110.2.1,d.110.3.9 146024,146025 3c8cA 240 0.6816 2p7jA 287 0.8728 d.110.6.2,d.110.6.2 149287,149288 3crkA 407 1.300 3fosA 214 5.356 3by8A 142 7.625 d.110.6.1 155722 2w1rA 123 9.295 1s5aA 150 10.47 d.17.4.10 98525 3k2nA 177 11.06 2qhkA 174 12.61 3f14A 112 13.87 1oj5A 132 14.28 d.110.3.8 93087 1p0zA 131 14.48 d.110.6.1 93882 2a2lA 145 14.56 d.110.9.1 126035 3grdA 134 16.97 3ff2A 117 17.83 2zpmA 91 19.28 1nwwA 149 19.94 d.17.4.8 86306 3k6eA 156 21.86 3ebtA 132 24.79 d.17.4.9 158086 3fgyA 135 27.12 3ddjA 296 27.90 d.37.1.1,d.37.1.1 157553,157554 2fckA 181 28.31 d.108.1.1 133272 3ezuA 342 28.39 3h51A 156 31.63 3id4A 93 33.28 3bqxA 150 34.68 3fkaA 120 37.16 1lox 662 37.94 1opy 131 38.53 2q4aA 330 38.95 b.82.2.8 139839 3ci6A 171 40.27 2a15A 139 43.64 d.17.4.3 125973 1l1oC 181 45.33 b.40.4.3 73480 3b8lA 163 46.43 d.17.4.28 154955 3k0zA 159 47.94 2q16A 219 49.13 2rbbA 141 52.67 3d9rA 135 53.41 d.17.4.27 157459 2egxA 269 54.64 1tuhA 156 55.61 d.17.4.11 107345 2geyA 158 56.28 d.17.4.9 147114 3f9sA 146 59.40 3id2A 90 62.24 3huhA 152 62.28 3gwrA 144 64.44 1dmmA 131 70.31 d.17.4.3 38114 3kizA 394 70.97 2i2cA 272 72.50 7odcA 424 72.84 b.49.2.3,c.1.6.1 26488,28650 1esjA 284 74.43 c.72.1.2 34943 3ec9A 140 76.53 d.17.4.10 158092 3cu3A 172 83.62 d.17.4.28 156988 1ur3M 319 84.23 c.1.7.1 99806 3f7sA 142 84.96 1et0A 269 86.87 e.17.1.1 43289 1loxA 662 87.58 a.119.1.2,b.12.1.1 19238,23638