# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gj3A 120 5.32e-12 3lyxA 124 1.39e-11 2b02A 119 1.97e-10 1ew0A 130 5.77e-10 d.110.3.2 40905 3h9wA 115 7.30e-10 1n9lA 109 8.23e-10 d.110.3.6 85468 3f1pB 121 8.61e-10 2z6cA 129 1.10e-09 1bywA 110 1.94e-09 d.110.3.6 40912 3bwlA 126 2.15e-09 1jnuA 104 2.74e-09 d.110.3.6 71762 1x0oA 119 3.75e-09 1lswA 131 6.17e-09 d.110.3.2 78181 3f1pA 117 7.01e-09 3d72A 149 1.10e-08 2pr5A 132 1.22e-08 2pdrA 149 1.63e-08 2v0uA 146 1.74e-08 2pd8A 149 2.03e-08 3luqA 114 2.06e-08 1xj4A 119 2.15e-08 d.110.3.2 122027 2vv6A 119 2.52e-08 3ewkA 227 4.52e-08 2wkpA 332 4.97e-08 2wkqA 332 5.40e-08 2wkrA 332 6.62e-08 1v9yA 167 9.12e-08 d.110.3.2 108454 1p97A 114 1.78e-07 d.110.3.7 94382 3eehA 125 1.78e-07 3fc7A 125 2.49e-07 3gdiA 309 8.76e-07 2r78A 117 3.14e-06 3caxA 369 1.80e-05 3icyA 118 4.06e-05 3a0sA 96 0.000399 3a0vA 96 0.000488 2qkpA 151 0.000591 3b33A 115 0.000628 2vlgA 111 0.000692 3pyp 125 0.005620 1nwzA 125 0.006364 d.110.3.1 86370 3fg8A 118 0.01738 2jheA 190 0.02113 1mzuA 129 0.03013 d.110.3.1 79714 2oolA 337 0.1108 d.110.2.1,d.110.3.9 148932,148933 1ll8A 114 0.2152 d.110.3.5 78089 3k6eA 156 4.849 1repC 251 7.325 a.4.5.10,a.4.5.10 16125,16126 1tyeB 440 8.956 b.1.15.1,c.62.1.1,g.16.2.1 112830,112831,112832 2afwA 329 9.306 c.56.5.8 126707 3by9A 260 9.648 2vdrB 461 9.668 3bqaA 148 11.03 1h2rL 534 12.06 e.18.1.1 43298 2hjeA 221 13.23 d.110.6.3 147294 1fiqC 763 16.01 d.41.1.1,d.133.1.1 38588,41418 3lqnA 150 16.20 1p0zA 131 16.37 d.110.6.1 93882 2w1rA 123 20.41 2axoA 270 20.84 c.47.1.19 127496 2ek8A 421 20.95 2qhkA 174 22.43 1kllA 130 23.88 d.32.1.2 72720 2fckA 181 26.74 d.108.1.1 133272 1ubkL 534 28.09 e.18.1.1 88422 2o9cA 342 28.98 d.110.2.1,d.110.3.9 148684,148685 3ey8A 133 31.70 2p08A 115 32.29 1wuiL 534 32.50 e.18.1.1 121289 3c8cA 240 33.81 2veaA 520 34.85 d.110.2.1,d.110.2.4,d.110.3.9 153022,153023,153024 3bqxA 150 41.12 3dxoA 121 42.33 d.17.4.19 157933 3kpbA 122 42.40 1vr9A 213 42.92 d.37.1.1 144433 3hnqA 144 43.09 3b42A 135 45.22 3huhA 152 45.33 2p7jA 287 46.85 d.110.6.2,d.110.6.2 149287,149288 3b9jC 763 47.37 d.41.1.1,d.133.1.1 155004,155005 3lq9A 134 47.71 2a97A 439 48.67 2a4xA 138 50.89 d.32.1.2 126166 1a8vA 121 51.04 a.140.3.1,b.40.4.5 64712,64713 3guxA 314 51.06 3bcyA 155 52.33 2p9mA 138 55.40 1zn6A 227 56.15 d.303.1.1 125373 3h3hA 122 56.22 3hrdA 425 58.05 3fosA 214 58.12 1zhhB 242 59.37 d.110.6.3 144740 3kolA 156 65.70 1yaxA 153 65.81 2yzqA 282 67.07 d.37.1.1,d.37.1.1 153904,153905 2bueA 202 68.99 2a8aA 439 69.22 3iibA 444 69.49 2jacA 110 71.41 1wlfA 179 71.73 d.31.1.1,b.52.2.3 109396,109397 1dwkA 156 73.71 a.35.1.4,d.72.1.1 17075,39606 3ff0A 163 75.13 2e12A 101 77.06 3etrC 755 77.59 2cw9A 194 78.18 d.17.4.13 130920 3jumA 185 78.98 3h3xQ 549 80.66 1xtzA 264 80.83 3f5bA 182 81.18 2rk5A 87 82.21 d.145.1.4 152108 3i28A 555 82.55 1e3dB 542 83.65 e.18.1.1 59189 2yziA 138 86.63 d.37.1.1 153902 2yvyA 278 89.98