# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2w01A 208 9.46e-28 2wz1A 219 2.67e-26 1azsA 220 2.71e-26 1azsA d.58.29.1 39416 1azsB 212 1.79e-25 1azsA d.58.29.1 39423 1wc3A 219 1.02e-24 d.58.29.1 114495 1wc1A 226 1.47e-24 d.58.29.1 114492 1fx2A 235 1.38e-22 1fx2A d.58.29.1 39430 1ab8A 220 2.48e-22 1azsA d.58.29.1 39414 1ybtA 184 1.45e-19 1y10A 407 4.31e-18 2qv6A 268 1.56e-03 3i5aA 334 2.63e-03 3lmbA 165 2.57e-02 3i5bA 179 1.81e-01 3h5nA 353 2.45e-01 3iclA 171 2.99e-01 3h5aA 358 3.61e-01 2vwkA 773 4.59e-01 c.55.3.5,e.8.1.1 153677,153678 2fmyA 220 5.24e-01 3i5cA 206 5.95e-01 3breA 358 8.43e-01 2isbA 192 1.25e+00 c.8.9.1 137601 3cg0A 140 1.42e+00 2hf9A 226 1.68e+00 1w25A 459 1.71e+00 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 3drnA 161 1.80e+00 2v74B 346 2.09e+00 2a8mA 420 2.14e+00 3d36A 244 2.42e+00 3gmgA 170 2.72e+00 3khrA 341 3.25e+00 2a8jA 420 3.39e+00 3b3fA 341 3.54e+00 1vkwA 218 3.67e+00 d.90.1.2 108695 1ig8A 486 3.78e+00 2yhx c.55.1.3,c.55.1.3 64746,64747 3dhnA 227 4.01e+00 2p5yA 311 4.09e+00 1n3lA 372 4.25e+00 c.26.1.1 79966 1mx0A 472 4.26e+00 a.156.1.3,d.14.1.3,d.122.1.2 79618,79619,79620 2ddzA 190 4.28e+00 d.104.1.4 146486 1yvuA 706 4.52e+00 b.34.14.1,c.55.3.10 124120,124121 1vgjA 184 4.73e+00 3lk42 277 4.76e+00 2e74D 179 4.92e+00 b.33.1.1,f.23.12.1 132049,132050 1aipA 405 5.11e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25697,25737,32132 2dplA 308 5.21e+00 2a8lA 420 5.35e+00 3lk2B 243 5.38e+00 3k1rA 192 5.56e+00 3kezA 461 5.62e+00 2dskA 311 6.09e+00 2nvpA 435 6.15e+00 a.102.1.8 148478 3it3A 342 6.17e+00 1yzyA 413 6.77e+00 c.146.1.1 124292 3tglA 269 6.78e+00 c.69.1.17 34733 3guyA 230 6.85e+00 2vi7A 177 7.58e+00 1icpA 376 7.79e+00 1oyc c.1.4.1 62270 2p36A 335 7.84e+00 2pp6A 102 8.03e+00 b.106.1.2 149728 2glcA 342 8.58e+00 2biiA 424 8.62e+00 1jx4A 352 8.85e+00 d.240.1.1,e.8.1.7 90378,90379 3kqfA 265 9.21e+00 2ifaA 208 9.47e+00 d.90.1.1 137329 1kutA 230 9.73e+00 d.143.1.1 73017 3futA 271 1.01e+01 2vg0A 227 1.04e+01 2pl3A 236 1.06e+01 1g8aA 227 1.09e+01 c.66.1.3 90506 1iznB 277 1.12e+01 e.43.1.2 83848 3floA 460 1.12e+01 3c0iA 351 1.15e+01 1kaeA 434 1.19e+01 c.82.1.2 72247 3hgjA 349 1.19e+01 1zuoA 186 1.19e+01 d.20.1.1 125680 3krtA 456 1.21e+01 2jejA 358 1.23e+01 d.240.1.1,e.8.1.7 138284,138285 1bf6A 291 1.31e+01 1pscA c.1.9.3 29065 2ftpA 302 1.34e+01 2qgqA 304 1.35e+01 3gd4A 511 1.36e+01 3istA 269 1.36e+01 2gzmA 267 1.38e+01 1x0lA 333 1.41e+01 3ef2A 293 1.47e+01 2ihoA 293 1.48e+01 b.42.2.1,d.3.1.18 147681,147682 1nqkA 381 1.48e+01 c.1.16.4 92050 1ii7A 333 1.48e+01 1ii7A d.159.1.4 62415 3dsdA 349 1.48e+01 1h6zA 913 1.49e+01 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 3ebuA 313 1.50e+01 2pifA 276 1.53e+01 d.382.1.1 149509 2yweA 600 1.55e+01 2q8pA 260 1.57e+01 1bmtA 246 1.59e+01 1bmtA a.46.1.1,c.23.6.1 17757,31235 3eawX 313 1.60e+01 1g6oA 330 1.74e+01 1g6oA c.37.1.11 32430 2pt7A 330 1.74e+01 c.37.1.11 149834 2vg1A 228 1.75e+01 2dwuA 276 1.77e+01 2c78A 405 1.80e+01 b.43.3.1,b.44.1.1,c.37.1.8 130037,130038,130039 2vvtA 290 1.83e+01 2jfzA 255 1.84e+01 1gpmA 525 1.96e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1pmi 440 1.97e+01 1pmi 1pmiA 440 1.97e+01 b.82.1.3 28114 3kynA 275 2.00e+01 1uluA 261 2.02e+01 c.2.1.2 113292 1cnt1 187 2.03e+01 1cnt3 2olnA 397 2.11e+01 1kzfA 230 2.13e+01 d.108.1.3 73354 3ip4A 485 2.18e+01 3h4tA 404 2.18e+01 1ox6A 555 2.19e+01 c.1.2.1,c.23.16.1 87505,87506 3dgeA 258 2.19e+01 3kyoA 273 2.20e+01 1qhtA 775 2.25e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 2hkjA 469 2.28e+01 a.156.1.3,d.14.1.3,d.122.1.2 136553,136554,136555 2igbA 179 2.29e+01 c.61.1.1 147655 3hvaA 177 2.31e+01 1fds 327 2.33e+01 1fds 1qqcA 773 2.58e+01 1tgoA c.55.3.5,e.8.1.1 33724,43013 3f6oA 118 2.60e+01 2pqmA 343 2.60e+01 2i1mA 333 2.64e+01 2apjA 260 2.66e+01 c.23.10.7 127128 1exmA 405 2.67e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 3ezuA 342 2.67e+01 1rypJ 204 2.72e+01 d.153.1.4 41878 2c2aA 258 2.72e+01 a.30.2.1,d.122.1.3 129662,129663 2qhpA 296 2.74e+01 1nnwA 252 2.78e+01 d.159.1.5 80674 2ps1A 226 2.78e+01 2fb1A 226 2.79e+01 a.4.5.68,d.113.1.6 133225,133226 2gzxA 265 2.80e+01 2r751 338 2.83e+01 2hhjA 267 2.83e+01 c.60.1.1 136497 3h2sA 224 2.84e+01 1onqA 283 2.89e+01 b.1.1.2,d.19.1.1 93365,93366 1wu7A 434 2.89e+01 c.51.1.1,d.104.1.1 121275,121276 2hk0A 309 2.89e+01 1edtA 271 2.93e+01 c.1.8.5 28993 3euaA 329 2.93e+01 2i2cA 272 2.95e+01 3gg8A 511 3.00e+01 3lcdA 329 3.07e+01 3eeiA 233 3.21e+01 3jz4A 481 3.21e+01 2it9A 127 3.23e+01 d.18.1.3 137634 1jmtA 104 3.23e+01 d.58.7.3 63180 1kr4A 125 3.23e+01 d.58.5.2 72889 3e70C 328 3.26e+01 1jvnA 555 3.29e+01 c.1.2.1,c.23.16.1 67355,67356 1s8eA 333 3.32e+01 d.159.1.4 105368 3hgcA 465 3.34e+01 1jtvA 327 3.41e+01 c.2.1.2 84230 1c93A 265 3.42e+01 2ebn c.1.8.5 28998 1ps9A 671 3.42e+01 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 3dscA 349 3.43e+01 d.159.1.4 157840 1vmeA 410 3.46e+01 c.23.5.1,d.157.1.3 108893,108894 1mu5A 471 3.49e+01 a.156.1.3,d.14.1.3,d.122.1.2 79472,79473,79474 1e79D 482 3.52e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 18272,26437,32317 2r6r1 338 3.53e+01 2jfuA 291 3.61e+01 1b24A 188 3.62e+01 1b24A d.95.2.1,d.95.2.1 40573,40574 3hheA 255 3.68e+01 1zk4A 251 3.83e+01 c.2.1.2 125176 1r1uA 106 3.94e+01 a.4.5.5 104771 1n6zA 105 3.95e+01 d.263.1.1 85369 3fvvA 232 4.00e+01 2abyA 146 4.08e+01 2qmiA 447 4.11e+01 1snyA 267 4.18e+01 c.2.1.2 105833 1ru3A 732 4.19e+01 e.26.1.3 97835 3d6kA 422 4.27e+01 2j5gA 263 4.28e+01 2e1dA 331 4.28e+01 c.1.10.1 146627 1vheA 373 4.30e+01 b.49.3.1,c.56.5.4 100669,100670 1ltlA 279 4.37e+01 b.40.4.11 84701 1ws8A 109 4.38e+01 b.6.1.1 114843 2aydA 76 4.40e+01 2ggoA 401 4.43e+01 2vs7A 199 4.50e+01 3icjA 534 4.51e+01 3hinA 275 4.56e+01 2nwqA 272 4.56e+01 2rgyA 290 4.58e+01 2zyhA 475 4.59e+01 1nh9A 87 4.60e+01 d.68.6.1 91878 2jdiD 482 4.71e+01 a.69.1.1,b.49.1.1,c.37.1.11 138263,138264,138265 2jjfA 449 4.74e+01 2jjeA 449 4.74e+01 2cjgA 449 4.74e+01 2cjwA 192 4.78e+01 2jjhA 449 4.88e+01 2d2rA 245 4.93e+01 3ek1A 504 4.94e+01 3hdxA 478 4.94e+01 1yarA 233 4.97e+01 d.153.1.4 122837 2v8hA 474 5.03e+01 2wjwA 388 5.04e+01 3gh2X 315 5.06e+01 1dkmA 410 5.12e+01 1dklA c.60.1.2 34000 2v9vA 135 5.13e+01 a.4.5.35,a.4.5.35 152809,152810 1yp1A 202 5.13e+01 1xhkA 187 5.30e+01 d.14.1.10 115299 1nv8A 284 5.38e+01 c.66.1.30 86224 1kw3B 292 5.39e+01 d.32.1.3,d.32.1.3 77549,77550 3jslA 318 5.48e+01 3l4gB 589 5.52e+01 1r9cA 139 5.58e+01 d.32.1.2 97255 3gzbA 154 5.63e+01 2uxyA 341 5.71e+01 3hhyA 280 5.71e+01 1uv7A 110 5.77e+01 d.67.4.1 100040 1tk9A 188 5.80e+01 c.80.1.3 107082 1ass 159 5.87e+01 1a6dA 1assA 159 5.87e+01 c.8.5.2 30818 2zztA 107 5.93e+01 1t8hA 277 6.04e+01 d.194.1.2 106664 3cfzA 292 6.04e+01 1k75A 434 6.11e+01 c.82.1.2 68253 1htyA 1015 6.18e+01 a.8.3.1,b.30.5.6,c.6.2.1 83064,83065,83066 2ow6A 1045 6.19e+01 a.8.3.1,b.30.5.6,c.6.2.1 149039,149040,149041 1xhlA 297 6.22e+01 c.2.1.2 109591 3berA 249 6.27e+01 1pyfA 312 6.28e+01 c.1.7.1 95334 3h5vA 394 6.30e+01 2gqrA 237 6.38e+01 2wwwA 349 6.46e+01 3ighX 486 6.57e+01 2pjhB 193 6.61e+01 b.52.2.3,d.31.1.1 149563,149564 1z41A 338 6.67e+01 c.1.4.1 124421 1atiA 505 6.72e+01 1atiA c.51.1.1,d.104.1.1 33196,40745 1mzjA 339 6.77e+01 c.95.1.2,c.95.1.2 79700,79701 1jqgA 433 6.79e+01 c.56.5.1,d.58.3.1 71791,71792 1z8kA 193 6.82e+01 b.159.1.1 124703 2dpxA 174 6.84e+01 2zu9A 394 6.85e+01 1yauA 233 6.88e+01 d.153.1.4 122851 1fm0E 150 6.91e+01 1fmaE d.41.5.1 38629 1ypvA 313 6.99e+01 1ym5A 300 7.08e+01 1e5pA 151 7.08e+01 1bj7 b.60.1.1 59272 1cex 214 7.13e+01 1cex 1cexA 214 7.13e+01 c.69.1.30 31285 3kruA 343 7.21e+01 2o9pA 454 7.21e+01 1wmaA 276 7.21e+01 c.2.1.2 121042 1vqoE 178 7.26e+01 d.141.1.1,d.141.1.1 120366,120367 1urnA 97 7.28e+01 1urnA d.58.7.1 39153 2esnA 310 7.33e+01 a.4.5.37,c.94.1.1 132333,132334 3by9A 260 7.33e+01 2brjA 188 7.38e+01 b.159.1.1 146213 1k5nA 276 7.43e+01 b.1.1.2,d.19.1.1 77266,77267 1vlmA 219 7.50e+01 c.66.1.41 108836 1j1uA 306 7.50e+01 c.26.1.1 83980 2zyrA 484 7.57e+01 3ddoA 253 7.58e+01 1zxxA 319 7.59e+01 2qtsA 438 7.65e+01 1kngA 156 7.65e+01 c.47.1.10 72777 3d9yA 127 7.67e+01 2odkA 89 7.67e+01 d.306.1.1 139030 2ifxA 114 7.71e+01 d.58.4.19 147653 3bs5B 80 7.77e+01 3i2vA 127 7.92e+01 2ixoA 323 7.96e+01 a.268.1.1 137779 2j7qA 232 7.98e+01 d.3.1.20 145673 1c17M 177 7.99e+01 1c17M f.18.1.1 43648