# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1azsA 220 3.74e-32 1azsA d.58.29.1 39416 2wz1A 219 2.27e-31 2w01A 208 2.72e-30 1azsB 212 3.25e-29 1azsA d.58.29.1 39423 1wc3A 219 1.38e-28 d.58.29.1 114495 1wc1A 226 1.77e-28 d.58.29.1 114492 1ab8A 220 7.96e-26 1azsA d.58.29.1 39414 1fx2A 235 2.13e-22 1fx2A d.58.29.1 39430 1y10A 407 4.72e-21 1ybtA 184 1.91e-20 2qv6A 268 1.15e-04 3i5aA 334 4.63e-04 3iclA 171 8.00e-04 3i5bA 179 9.34e-03 3i5cA 206 1.09e-02 3breA 358 1.35e-02 1t8hA 277 2.23e-01 d.194.1.2 106664 3bldA 386 4.14e-01 1r5yA 386 8.82e-01 c.1.20.1 97134 2o1sA 621 9.26e-01 1p5dX 463 9.86e-01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1w25A 459 1.30e+00 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 1zxxA 319 1.60e+00 2dgkA 452 1.66e+00 3hmuA 472 1.99e+00 2f2bA 246 2.06e+00 2o1xA 629 2.37e+00 1k2yX 463 2.49e+00 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 2x2bA 78 2.98e+00 2q8uA 336 3.11e+00 1pud 386 3.27e+00 1pud 1pmmA 466 3.84e+00 c.67.1.6 94901 2dgmA 466 4.07e+00 c.67.1.6 131508 1wywA 230 4.76e+00 c.18.1.2 144566 1o5xA 248 4.87e+00 c.1.1.1 92528 2wabA 341 5.07e+00 1o6cA 388 5.92e+00 c.87.1.3 92565 3if2A 444 5.96e+00 1szqA 483 6.07e+00 e.44.1.1 99045 1u8xX 472 6.23e+00 c.2.1.5,d.162.1.2 107741,107742 2dj5A 133 6.64e+00 c.92.1.3 131536 2vg1A 228 6.87e+00 2dskA 311 7.04e+00 2waoA 341 7.76e+00 1n5dA 288 7.83e+00 c.2.1.2 80030 1m1nB 522 8.02e+00 c.92.2.3 78418 3gb0A 373 8.17e+00 1pxgA 382 8.30e+00 c.1.20.1 95287 2zyhA 475 8.61e+00 3hfyA 386 8.63e+00 1j4nA 271 8.92e+00 f.19.1.1 71510 2rghA 571 8.92e+00 2pulA 397 8.96e+00 d.144.1.6 149865 3i4jA 430 9.00e+00 3c96A 415 9.30e+00 c.3.1.2,d.16.1.2 156122,156123 1ja1A 622 9.86e+00 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 2biiA 424 1.04e+01 1ylqA 96 1.05e+01 d.218.1.5 123671 3beoA 375 1.06e+01 3h2dA 155 1.11e+01 2isbA 192 1.12e+01 c.8.9.1 137601 1w30A 201 1.13e+01 c.61.1.1 114118 2o3iA 405 1.15e+01 e.73.1.1 148577 3i28A 555 1.20e+01 2qghA 425 1.21e+01 2fn9A 290 1.21e+01 1syyA 346 1.22e+01 a.25.1.2 106126 2yy7A 312 1.30e+01 2hhjA 267 1.30e+01 c.60.1.1 136497 1ru3A 732 1.36e+01 e.26.1.3 97835 1tllA 688 1.38e+01 b.43.4.1,c.23.5.2,c.25.1.4 107128,107129,107130 3i5tA 476 1.39e+01 2vg0A 227 1.42e+01 1b85A 351 1.42e+01 1arv a.93.1.1 18581 2jjfA 449 1.44e+01 3hvaA 177 1.44e+01 1qpaA 345 1.46e+01 1arv a.93.1.1 18585 2absA 383 1.53e+01 c.72.1.1 126534 1w6tA 444 1.54e+01 c.1.11.1,d.54.1.1 120670,120671 1sw2A 275 1.55e+01 c.94.1.1 106064 2jjeA 449 1.55e+01 3g6mA 406 1.56e+01 3fcrA 458 1.58e+01 1o6zA 303 1.58e+01 c.2.1.5,d.162.1.1 81107,81108 2zysA 479 1.59e+01 1wz9A 375 1.66e+01 2hzlA 365 1.69e+01 3gjuA 460 1.72e+01 3bmxA 642 1.74e+01 3k6kA 322 1.76e+01 1b80A 351 1.76e+01 1arv a.93.1.1 18579 1qjaA 245 1.77e+01 1qjaA a.118.7.1 19204 2cjgA 449 1.83e+01 1f80D 81 1.90e+01 1acp a.28.1.1 59686 1c8bA 371 1.92e+01 1c8bA c.56.1.2 59082 3k95A 669 1.94e+01 2ij2A 470 2.05e+01 a.104.1.1 137449 3m49A 690 2.06e+01 3enkA 341 2.12e+01 3h4tA 404 2.13e+01 2impA 479 2.15e+01 2hf9A 226 2.17e+01 3hylA 690 2.17e+01 3lnpA 468 2.20e+01 2zyiA 475 2.22e+01 1vdmA 153 2.23e+01 c.61.1.1 119994 1aj2 282 2.25e+01 1aj2 1aj2A 282 2.25e+01 c.1.21.1 29665 2zyrA 484 2.27e+01 2elaA 175 2.27e+01 1to6A 371 2.28e+01 c.141.1.1 107170 3l22A 441 2.34e+01 2qvcA 313 2.38e+01 2dkaA 544 2.38e+01 2qaiA 111 2.41e+01 2jjhA 449 2.43e+01 2g50A 530 2.43e+01 b.58.1.1,c.1.12.1,c.49.1.1 134618,134619,134620 2nvpA 435 2.44e+01 a.102.1.8 148478 2o02A 230 2.46e+01 a.118.7.1 148541 3bamA 213 2.48e+01 1bam c.52.1.3 33288 3gvgA 283 2.55e+01 1ivyA 452 2.59e+01 1ivyA c.69.1.5 34654 3c8mA 331 2.66e+01 2gf3A 389 2.70e+01 c.3.1.2,d.16.1.3 135070,135071 1hjxA 362 2.74e+01 c.1.8.5,d.26.3.1 83512,83513 2ej8A 160 2.74e+01 2prsA 284 2.77e+01 2o8lA 274 2.81e+01 b.47.1.1 138932 2vpnA 316 2.84e+01 1wmaA 276 2.84e+01 c.2.1.2 121042 3dnmA 336 2.89e+01 3ignA 177 2.91e+01 1qjbA 245 3.00e+01 1qjaA a.118.7.1 19202 2pa6A 427 3.02e+01 1zd3A 555 3.04e+01 c.108.1.2,c.69.1.11 124930,124931 1zo4A 473 3.15e+01 1x03A 252 3.20e+01 a.238.1.1 121541 1gbs 185 3.23e+01 153l 1gbsA 185 3.23e+01 d.2.1.5 36986 2qgmA 445 3.27e+01 c.150.1.3 150781 1uk8A 282 3.28e+01 c.69.1.10 107907 1llpA 343 3.28e+01 a.93.1.1 18578 2g0wA 296 3.29e+01 c.1.15.4 134503 2cjpA 328 3.32e+01 3gr4A 550 3.37e+01 3komA 663 3.41e+01 2cxxA 190 3.42e+01 c.37.1.8 131013 2fcaA 213 3.45e+01 c.66.1.53 133262 2vi7A 177 3.45e+01 2jc5A 259 3.58e+01 3c6qA 311 3.61e+01 2dzmA 100 3.63e+01 1e5pA 151 3.68e+01 1bj7 b.60.1.1 59272 2boqA 331 3.72e+01 2ibnA 250 3.81e+01 a.211.1.4 137195 2j6lA 500 3.89e+01 3gyyA 341 3.96e+01 3fsgA 272 3.98e+01 1icpA 376 4.01e+01 1oyc c.1.4.1 62270 2wwuA 371 4.02e+01 1z45A 699 4.03e+01 b.30.5.4,c.2.1.2 124427,124428 2wj5A 101 4.04e+01 2zwiA 373 4.05e+01 3fmuA 331 4.06e+01 1e79G 272 4.07e+01 1e79G c.49.2.1 33158 3hheA 255 4.07e+01 1u60A 310 4.08e+01 e.3.1.2 107692 2vk2A 306 4.13e+01 1c4xA 285 4.16e+01 1c4xA c.69.1.10 34684 1qw9A 502 4.21e+01 b.71.1.2,c.1.8.3 96466,96467 2r6zA 258 4.21e+01 1nnwA 252 4.23e+01 d.159.1.5 80674 1l9cA 389 4.24e+01 c.3.1.2,d.16.1.3 77815,77816 2g39A 497 4.26e+01 c.124.1.2,c.124.1.2 134553,134554 2r11A 306 4.32e+01 3hf2A 482 4.37e+01 1gmlA 178 4.40e+01 c.8.5.2 70273 1t5aA 567 4.43e+01 3iicA 155 4.52e+01 1tbuA 118 4.52e+01 d.38.1.3 119223 2d0tA 406 4.57e+01 a.266.1.2 131093 1ebfA 358 4.58e+01 1ebuA c.2.1.3,d.81.1.2 30033,39948 1ehyA 294 4.61e+01 1ehyA c.69.1.11 34693 3ln3A 324 4.65e+01 2hk0A 309 4.65e+01 3jsaA 328 4.66e+01 1v4sA 455 4.69e+01 c.55.1.3,c.55.1.3 100309,100310 2w2jA 291 4.69e+01 2j6bA 109 4.73e+01 d.321.1.1 138078 3guyA 230 4.85e+01 3flaA 267 4.87e+01 1jnrB 150 4.87e+01 d.58.1.5 66969 2wlzA 548 4.96e+01 2c5aA 379 4.97e+01 c.2.1.2 129894 1lbkA 208 5.04e+01 a.45.1.1,c.47.1.5 73809,73810 1sgjA 284 5.06e+01 c.1.12.5 105535 2b05A 246 5.06e+01 3ezuA 342 5.11e+01 1d2kA 392 5.22e+01 1d2kA c.1.8.5,d.26.3.1 29008,38442 1knxA 312 5.22e+01 c.98.2.1,c.91.1.2 77459,77460 3lsgA 103 5.25e+01 1el5A 389 5.25e+01 1b3mA c.3.1.2,d.16.1.3 30369,37937 1mc2A 122 5.27e+01 a.133.1.2 74622 2c1nA 258 5.35e+01 a.118.7.1 129640 3l3eA 107 5.41e+01 1peqA 714 5.42e+01 a.98.1.1,c.7.1.2 104131,104132 3dkbA 390 5.50e+01 1gg3A 279 5.56e+01 1ef1A a.11.2.1,b.55.1.5,d.15.1.4 16372,27007,37615 1nqkA 381 5.56e+01 c.1.16.4 92050 1nv8A 284 5.77e+01 c.66.1.30 86224 1bu7A 455 5.82e+01 1bu7A a.104.1.1 18937 1u0fA 564 5.84e+01 c.80.1.2 112912 2be1A 339 5.85e+01 1othA 321 5.97e+01 1othA c.78.1.1,c.78.1.1 35260,35261 1owqA 361 5.97e+01 c.1.8.5,d.26.3.1 104041,104042 3h75A 350 6.07e+01 3bilA 348 6.08e+01 1jkmA 358 6.08e+01 1jkmA c.69.1.2 34633 3d3aA 612 6.10e+01 2o7rA 338 6.13e+01 3lw1A 253 6.15e+01 1vjpA 394 6.17e+01 c.2.1.3,d.81.1.3 100828,100829 1m1nA 491 6.18e+01 c.92.2.3 78417 2atpB 115 6.25e+01 b.1.1.1 144837 2bb6A 414 6.29e+01 1s1hD 179 6.32e+01 i.1.1.1 105157 2pi6A 361 6.33e+01 c.1.8.5,d.26.3.1 149501,149502 1iweA 457 6.34e+01 c.37.1.10 71486 1zj8A 566 6.36e+01 d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 146003,146004,146005,146006 2wk2A 540 6.37e+01 1cvl 319 6.40e+01 1cvl 1cvlA 319 6.40e+01 c.69.1.18 34786 3cgxA 242 6.42e+01 3jz4A 481 6.43e+01 1rrzA 86 6.44e+01 a.7.10.1 105086 2h3hA 313 6.44e+01 1nj4A 363 6.50e+01 b.105.1.1,e.3.1.1 80545,80546 3e38A 343 6.53e+01 3l55A 353 6.59e+01 2va8A 715 6.59e+01 3ipiA 295 6.68e+01 1txoA 237 6.74e+01 d.219.1.1 112781 3fkjA 347 6.80e+01 2cxnA 557 6.82e+01 1ll7A 392 6.94e+01 c.1.8.5,d.26.3.1 78085,78086 3eefA 182 6.96e+01 3dmmD 150 6.96e+01 1xhdA 173 6.96e+01 b.81.1.5 115295 3cinA 394 7.06e+01 1jx4A 352 7.11e+01 d.240.1.1,e.8.1.7 90378,90379 2c7pA 327 7.14e+01 c.66.1.26 130080 3ld9A 223 7.20e+01 2hdwA 367 7.21e+01 1wlsA 328 7.25e+01 2e5yA 133 7.28e+01 1toaA 313 7.35e+01 1toaA c.92.2.2 35598 3c2qA 345 7.37e+01 3ggdA 245 7.40e+01 1hpcA 131 7.40e+01 1htp b.84.1.1 28221 3k3oA 371 7.46e+01 1a49A 530 7.50e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27026,29255,33109 3i0zA 389 7.57e+01 3fy1A 395 7.57e+01 1esc 306 7.61e+01 1esc 1escA 306 7.61e+01 c.23.10.1 31334 1q7gA 359 7.66e+01 c.2.1.3,d.81.1.2 96038,96039 1v5tA 90 7.74e+01 d.15.1.1 108385 2napA 723 7.77e+01 2napA b.52.2.2,c.81.1.1 26926,35334 3k1aA 491 7.81e+01 2dknA 255 7.81e+01 2nsnA 95 7.97e+01