# List of template models which gave the target the best scores. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Template_ID Template_Length Template_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1y10A 361 1.372e-29 2w01A 202 4.865e-26 1ybtA 168 6.771e-24 1wc1A 197 2.098e-23 d.58.29.1 114492 2wz1A 198 8.421e-23 1wc3A 199 3.840e-22 d.58.29.1 114495 1fx2A 236 1.486e-20 1fx2A d.58.29.1 39430 1fx4A 232 2.220e-17 1fx2A d.58.29.1 39431 1culA 190 1.190e-16 1azsA d.58.29.1 39417 1azsA 191 7.394e-16 1azsA d.58.29.1 39416 1ab8A 178 4.292e-14 1azsA d.58.29.1 39414 1azsB 190 6.630e-14 1azsA d.58.29.1 39423 2voyK 33 2.771e+00 1ce4A 36 4.543e+00 1ce4A j.53.1.1 46337 1h5uA 812 4.948e+00 1a8i c.87.1.4 60655 3kz5A 48 5.369e+00 1d7qA 144 6.344e+00 1d7qA b.40.4.5 25331 1odpA 21 6.454e+00 j.39.1.1 46295 1sg6A 378 6.986e+00 e.22.1.1 105522 1krsA 111 7.030e+00 b.40.4.1 25256 1dqsA 382 7.203e+00 1dqsA e.22.1.1 43347 2cq2A 115 7.458e+00 d.58.7.1 130713 2ifoA 47 8.501e+00 h.1.4.1 45567 2wkdA 80 8.940e+00 1aoyA 79 9.089e+00 a.4.5.3 16087 2ifo 47 9.325e+00 2ifo 1h8bB 24 1.014e+01 1k8rB 83 1.054e+01 d.15.1.5 72180 1icxA 156 1.115e+01 d.129.3.1 71191 3ihnA 345 1.121e+01 1i35A 96 1.151e+01 d.15.1.5 66017 2k3oA 130 1.237e+01 1mldA 314 1.303e+01 2cmd c.2.1.5 30122 d.162.1.1 42089 2bbmB 27 1.307e+01 1ualA 244 1.325e+01 c.116.1.4 88383 3eeiA 232 1.349e+01 1u5tA 214 1.364e+01 a.4.5.54 107684 a.4.5.54 107685 1s1iF 162 1.453e+01 i.1.1.1 105180 1j53A 175 1.491e+01 c.55.3.5 77076 1kb0A 671 1.510e+01 a.3.1.6 68378 b.70.1.1 68379 1lm4A 191 1.562e+01 d.167.1.1 84626 3b9tA 420 1.574e+01 2bj7A 137 1.599e+01 a.43.1.3 128608 d.58.18.4 128609 2guiA 177 1.629e+01 c.55.3.5 135737 2hngA 126 1.685e+01 d.33.1.2 147311 3b8oA 222 1.783e+01 d.58.60.1 154973 3ddsA 812 1.789e+01 1fpoA 172 1.790e+01 1fpoA a.2.3.1 15693 a.23.1.1 16487 3knuA 193 1.839e+01 1noaA 114 1.880e+01 b.1.7.1 22208 2b20A 392 1.932e+01 b.1.18.20 127685 c.69.1.2 127686 2k3nA 161 1.950e+01 2cb4A 259 2.010e+01 2z0lA 300 2.213e+01 3gt2A 136 2.264e+01 1kbpA 425 2.292e+01 4kbpA b.1.12.1 22349 d.159.1.1 42068 2rdkA 102 2.362e+01 1p91A 269 2.463e+01 c.66.1.33 94378 2z26A 345 2.496e+01 2eg6A 344 2.522e+01 c.1.9.4 146826 2bzgA 230 2.730e+01 c.66.1.36 129559 2a5zA 240 2.756e+01 b.29.1.24 126184 1lqwA 184 2.775e+01 d.167.1.1 74210 2kcaA 110 2.859e+01 3hymB 302 2.882e+01 1v30A 119 2.886e+01 d.269.1.1 113496 1oniA 137 2.906e+01 d.79.1.1 87144 3hslX 288 2.906e+01 2gb4A 232 2.988e+01 1lmhA 185 3.115e+01 d.167.1.1 74036 3iefA 225 3.184e+01 1l5wA 797 3.201e+01 c.87.1.4 73605 2jqoA 109 3.207e+01 2ca9A 133 3.251e+01 1t7sA 130 3.393e+01 a.7.7.1 106636 3edtB 259 3.425e+01 2in5A 196 3.510e+01 b.177.1.1 147736 2h1rA 272 3.521e+01 3inoA 144 3.737e+01 1poiB 261 3.788e+01 1poiB c.124.1.3 34155 1sppB 113 3.843e+01 1sfp b.23.1.1 23897 1gl2D 56 3.847e+01 h.1.15.1 65281 2ztbA 248 3.883e+01 1gytA 504 3.901e+01 c.56.5.3 70766 c.50.1.1 70765 2kegA 33 3.950e+01 1fy7A 274 3.983e+01 1fy7A d.108.1.1 40817 1a8i 814 3.988e+01 1a8i