PFRMAT SS
TARGET T0520
AUTHOR SAM-T02-server
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0520.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 1499
METHOD
MODEL 1
S C 0.744
N C 0.582
A C 0.414
E C 0.368
R C 0.400
R E 0.413
L E 0.633
C E 0.764
A E 0.779
I E 0.775
L E 0.638
A H 0.459
A H 0.473
D H 0.371
M H 0.390
A H 0.466
G H 0.370
Y H 0.583
S H 0.621
R H 0.744
L H 0.751
M H 0.610
E H 0.483
R T 0.345
N S 0.399
E C 0.829
T H 0.905
D H 0.972
V H 0.982
L H 0.995
N H 0.995
R H 0.995
Q H 0.992
K H 0.993
L H 0.987
Y H 0.981
R H 0.979
R H 0.973
E H 0.955
L H 0.947
I H 0.964
D H 0.974
P H 0.985
A H 0.987
I H 0.980
A H 0.937
Q H 0.794
A T 0.532
G T 0.760
G C 0.491
Q E 0.617
I E 0.859
V E 0.821
K E 0.802
T E 0.741
T E 0.503
G E 0.332
D E 0.348
G E 0.639
M E 0.632
L E 0.639
A E 0.629
R E 0.405
F C 0.341
D C 0.384
T C 0.522
A C 0.449
Q G 0.287
A H 0.405
A H 0.710
L H 0.911
R H 0.954
C H 0.976
A H 0.988
L H 0.990
E H 0.990
I H 0.993
Q H 0.994
Q H 0.990
A H 0.982
M H 0.978
Q H 0.959
Q H 0.920
R H 0.868
E H 0.832
E H 0.645
D H 0.514
T C 0.356
P T 0.339
R T 0.462
K C 0.438
E C 0.513
R C 0.462
I E 0.475
Q E 0.795
Y E 0.944
R E 0.966
I E 0.946
G E 0.876
I E 0.764
N E 0.581
I E 0.458
G E 0.423
D E 0.515
I E 0.738
V E 0.842
L E 0.715
E E 0.554
D E 0.435
G T 0.308
D T 0.349
I C 0.318
F C 0.335
G C 0.369
D H 0.593
A H 0.811
V H 0.953
N H 0.960
V H 0.983
A H 0.982
A H 0.975
R H 0.958
L H 0.959
E H 0.929
A H 0.870
I H 0.748
S H 0.405
E C 0.447
P T 0.567
G T 0.556
A E 0.484
I E 0.910
C E 0.920
V E 0.746
S C 0.574
D H 0.949
I H 0.964
V H 0.965
H H 0.984
Q H 0.958
I H 0.903
T H 0.794
Q H 0.619
D H 0.411
R T 0.389
V T 0.361
S C 0.397
E C 0.464
P E 0.409
F E 0.566
T E 0.615
D E 0.535
L E 0.363
G C 0.316
L E 0.461
Q E 0.787
K E 0.840
V E 0.724
K E 0.394
N T 0.373
I C 0.526
T C 0.490
R S 0.624
P C 0.620
I E 0.766
R E 0.947
V E 0.963
W E 0.965
Q E 0.934
W E 0.767
V C 0.451
P C 0.522
D C 0.322
A C 0.292
D C 0.324
R C 0.304
D C 0.433
Q C 0.530
S C 0.605
H C 0.698
D C 0.812
P C 0.716
Q C 0.712
P C 0.454
S C 0.391
H G 0.288
V C 0.424
Q C 0.689
H C 0.995
END