# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3h3lA 241 1.20e-27 3hbkA 245 2.07e-27 3immA 201 2.04e-24 1gbg 214 0.003124 1dypA 271 0.008591 b.29.1.2 24185 2ayh 214 0.01770 1a8d 452 0.01772 2hykA 245 0.04595 1upsA 420 0.04652 b.29.1.2,b.42.2.3 113394,113395 2v73A 191 0.04808 1gbgA 214 0.07524 b.29.1.2 24171 3gneA 252 0.08069 1oq1A 223 0.1301 b.29.1.17 93408 1epwA 1290 0.1438 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 2uwaA 274 0.1519 2vxrA 482 0.1690 1d0hA 469 0.1797 b.29.1.6,b.42.4.2 24265,25610 1umzA 278 0.2611 b.29.1.2 99639 1diwA 441 0.2832 b.29.1.6,b.42.4.2 24264,25609 2ayhA 214 0.3192 b.29.1.2 24172 1uaiA 224 0.4823 b.29.1.18 107761 3ilfA 268 0.5322 3hmyA 450 0.5407 3juuA 280 0.5827 3ecqA 1531 1.050 2vy0A 264 1.321 1pz7A 204 1.881 b.29.1.4 95405 2ealA 148 2.010 1cpnA 208 2.034 b.29.1.2 24175 1c4rA 182 2.075 b.29.1.4 24229 1ajkA 214 2.205 b.29.1.2 24176 2d6mA 159 2.505 1mveA 243 2.694 b.29.1.2 85140 1gwmA 153 2.760 b.18.1.19 83348 2durA 253 2.869 3bodA 178 2.896 1a8dA 452 3.025 b.29.1.6,b.42.4.2 24262,25607 1kdkA 177 3.747 b.29.1.4 72351 2vu9A 444 4.489 2a6zA 222 4.936 b.29.1.13 126319 2nn8A 138 5.469 b.29.1.3 138392 1b09A 206 6.026 b.29.1.5 24247 3hr9A 241 7.345 3glaA 100 7.723 3kycD 97 7.804 3cdzA 754 8.164 1sltA 134 8.215 b.29.1.3 24186 1lcl 142 8.294 1x99A 145 8.491 b.97.1.2 114978 1c28A 135 9.521 b.22.1.1 23857 2o5hA 136 9.545 d.363.1.1 148599 3b3qE 197 9.604 b.29.1.4 154813 1bkzA 135 10.27 b.29.1.3 24202 1uldA 150 10.44 b.29.1.3 99545 2jg9C 131 10.73 b.22.1.1 148047 1ajoA 214 10.79 b.29.1.2 24179 2ofcA 142 11.92 2jd4A 383 12.03 1a3k 137 12.26 1qu0A 191 13.56 b.29.1.4 24225 1o4yA 288 13.86 b.29.1.2 92473 1ww7A 160 14.39 2zhnA 148 16.16 2a6vA 226 16.16 b.29.1.13 126312 1kjlA 146 16.74 b.29.1.3 118689 1c3hA 137 17.04 b.22.1.1 90405 2cl2A 298 18.24 1fgyA 127 18.41 b.55.1.1 26976 2h0bA 184 19.13 2r0hA 164 19.31 1hdkA 141 20.33 b.29.1.3 65807 1gzwA 134 20.64 b.29.1.3 90535 3bp5A 117 22.87 b.1.1.1 155462 1hxnA 219 22.90 b.66.1.1 27529 1fsoA 139 24.11 b.1.18.8 60007 1shaA 104 24.73 d.93.1.1 40424 2kd2A 94 24.81 3kydD 115 25.24 1f5fA 205 25.26 b.29.1.4 24222 3dgtA 280 26.05 1kmtA 141 26.24 b.1.18.8 77442 2gw4B 162 26.26 2uurA 245 26.47 1pk6B 132 27.22 b.22.1.1 94802 2k1fA 88 27.38 1sacA 204 27.84 b.29.1.5 24237 1mucA 373 28.79 c.1.11.2,d.54.1.1 29236,38880 3b9cA 144 30.21 1h30A 422 30.35 b.29.1.4,b.29.1.4 76604,76605 2f7lA 455 31.27 1d1rA 116 31.44 d.64.1.1 39548 1ds6B 180 31.50 b.1.18.8 21898 1wm3A 72 31.55 d.15.1.1 114736 2uyzB 79 33.20 d.15.1.1 140039 2fpoA 202 33.22 c.66.1.46 133909 1shsA 147 33.61 b.15.1.1 23675 3bikB 134 34.15 b.1.1.1 155309 1d2sA 170 34.68 b.29.1.4 24221 3flpA 217 34.79 1jhnA 424 37.82 b.104.1.1,b.29.1.12 66722,70060 1vjhA 122 39.29 d.129.3.1 100811 1rhoA 145 39.57 b.1.18.8 21899 1is3A 135 40.36 b.29.1.3 76773 2dfuA 264 40.68 2cy5A 140 40.71 b.55.1.2 131018 2zzjA 238 46.14 1u5dA 108 47.02 b.55.1.1 119536 3a4rA 79 47.97 2jxxA 97 48.77 1h8gA 95 49.20 b.109.1.1 65735 1axkA 394 49.39 b.29.1.2,b.29.1.11 24181,24315 2iayA 114 49.45 d.376.1.1 147592 2r16A 182 49.92 1pk6C 129 50.71 b.22.1.1 94803 1ceeB 59 51.21 2w08A 204 53.03 2r55A 231 56.77 1wcuA 153 57.15 1o91A 178 57.70 b.22.1.1 92656 2oxgA 108 58.75 1euvB 86 60.29 d.15.1.1 37598 1o1yA 239 62.18 c.23.16.1 86554 3dtdA 175 62.30 1uuzA 137 63.16 d.233.1.1 100024 1mhxA 65 63.49 d.15.7.1 79134 1i82A 189 63.60 b.1.9.2 61937 2a46A 238 66.83 1faoA 126 68.73 b.55.1.1 26974 1yifA 533 68.83 b.29.1.23,b.67.2.1 123283,123284 1g1kA 143 68.96 b.2.2.2 22404 2k8hA 110 69.18 1edgA 380 69.23 c.1.8.3 28807 2iqyA 190 71.20 1k4nA 192 71.47 d.32.1.5 72059 2w39A 298 74.88 2i5fA 109 74.94 b.55.1.1 147512 3luuA 101 75.50 1a78A 134 77.27 b.29.1.3 24212 3ikwA 374 78.98 3km5A 180 79.50 2j2zB 173 81.23 b.2.3.2 145642 1pdkB 157 84.24 b.2.3.2 22427 1danU 121 88.36 b.1.2.1 21954 1eazA 125 88.58 b.55.1.1 70113 3entA 117 89.74