# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3h3lA 241 3.64e-27 3hbkA 245 5.64e-27 3immA 201 7.32e-24 1gbg 214 0.002123 1dypA 271 0.005392 b.29.1.2 24185 2ayh 214 0.01434 1a8d 452 0.01539 2hykA 245 0.01695 2v73A 191 0.04646 3gneA 252 0.05105 1upsA 420 0.05748 b.29.1.2,b.42.2.3 113394,113395 1gbgA 214 0.06050 b.29.1.2 24171 1epwA 1290 0.1082 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1oq1A 223 0.1152 b.29.1.17 93408 1d0hA 469 0.1349 b.29.1.6,b.42.4.2 24265,25610 1umzA 278 0.1700 b.29.1.2 99639 1diwA 441 0.1955 b.29.1.6,b.42.4.2 24264,25609 2vxrA 482 0.2007 2uwaA 274 0.2200 2vy0A 264 0.2493 3ilfA 268 0.3246 2ayhA 214 0.3477 b.29.1.2 24172 3hmyA 450 0.4481 3juuA 280 0.6955 1uaiA 224 0.7590 b.29.1.18 107761 1cpnA 208 0.9077 b.29.1.2 24175 1mveA 243 0.9841 b.29.1.2 85140 3ecqA 1531 1.076 1ajkA 214 1.174 b.29.1.2 24176 1pz7A 204 1.340 b.29.1.4 95405 1c4rA 182 1.460 b.29.1.4 24229 2d6mA 159 1.778 3hr9A 241 1.869 2ealA 148 2.083 2durA 253 2.737 2vu9A 444 2.816 1gwmA 153 3.473 b.18.1.19 83348 1a8dA 452 3.640 b.29.1.6,b.42.4.2 24262,25607 1ajoA 214 3.957 b.29.1.2 24179 3dgtA 280 4.346 1sltA 134 4.446 b.29.1.3 24186 1b09A 206 4.600 b.29.1.5 24247 3bodA 178 4.970 3glaA 100 5.301 1c28A 135 5.538 b.22.1.1 23857 1kdkA 177 5.555 b.29.1.4 72351 3kycD 97 6.123 1x99A 145 6.389 b.97.1.2 114978 2erfA 209 6.434 b.29.1.4 132287 2nn8A 138 6.577 b.29.1.3 138392 1bkzA 135 6.619 b.29.1.3 24202 1h30A 422 6.648 b.29.1.4,b.29.1.4 76604,76605 2a6zA 222 6.781 b.29.1.13 126319 1lcl 142 7.994 1qu0A 191 8.871 b.29.1.4 24225 1mucA 373 9.243 c.1.11.2,d.54.1.1 29236,38880 2o5hA 136 9.831 d.363.1.1 148599 1uldA 150 11.73 b.29.1.3 99545 2jg9C 131 12.03 b.22.1.1 148047 1pk6B 132 12.20 b.22.1.1 94802 3kydD 115 13.08 1wm3A 72 13.15 d.15.1.1 114736 1o4yA 288 13.42 b.29.1.2 92473 2ofcA 142 13.69 2zhnA 148 14.06 1a3k 137 14.88 1fgyA 127 15.01 b.55.1.1 26976 2r16A 182 15.40 1axkA 394 15.63 b.29.1.2,b.29.1.11 24181,24315 1gzwA 134 15.73 b.29.1.3 90535 1c3hA 137 15.82 b.22.1.1 90405 2gw4B 162 16.39 2fpoA 202 16.81 c.66.1.46 133909 1hdkA 141 16.99 b.29.1.3 65807 2uurA 245 17.91 1kjlA 146 19.19 b.29.1.3 118689 1yifA 533 20.28 b.29.1.23,b.67.2.1 123283,123284 2a6vA 226 21.55 b.29.1.13 126312 2cl2A 298 21.73 2jd4A 383 22.60 3flpA 217 22.63 1gmeA 151 23.75 b.15.1.1 65305 1f5fA 205 24.18 b.29.1.4 24222 1pls 113 24.26 1is3A 135 25.22 b.29.1.3 76773 1sacA 204 25.49 b.29.1.5 24237 2iayA 114 27.63 d.376.1.1 147592 1d2sA 170 27.72 b.29.1.4 24221 1d1rA 116 28.52 d.64.1.1 39548 1jhnA 424 28.52 b.104.1.1,b.29.1.12 66722,70060 1euvB 86 29.06 d.15.1.1 37598 2f7lA 455 29.34 3b9cA 144 29.96 1ww7A 160 31.57 1vjhA 122 31.77 d.129.3.1 100811 3bp5A 117 32.36 b.1.1.1 155462 1fsoA 139 34.50 b.1.18.8 60007 1shaA 104 35.69 d.93.1.1 40424 1hxnA 219 36.31 b.66.1.1 27529 2j2zB 173 36.92 b.2.3.2 145642 1uuzA 137 37.49 d.233.1.1 100024 1kmtA 141 37.75 b.1.18.8 77442 1faoA 126 38.87 b.55.1.1 26974 2kd2A 94 39.59 1o91A 178 39.75 b.22.1.1 92656 1eo1A 124 40.61 c.55.5.1 33739 2r0hA 164 41.47 3luuA 101 42.12 2oxgA 108 42.94 3gqtA 399 44.57 1i82A 189 45.27 b.1.9.2 61937 2dfuA 264 46.23 1wcuA 153 46.56 1u5dA 108 46.61 b.55.1.1 119536 2uyzB 79 48.40 d.15.1.1 140039 1a78A 134 49.41 b.29.1.3 24212 1h8gA 95 51.77 b.109.1.1 65735 1o13A 136 52.08 c.55.5.1 80762 1ca1 370 52.42 2vvfA 269 52.80 1rhoA 145 53.25 b.1.18.8 21899 2a46A 238 53.44 3bikB 134 54.05 b.1.1.1 155309 2h0bA 184 54.67 2uy6B 163 55.51 b.2.3.2 145763 2cy5A 140 56.07 b.55.1.2 131018 2zzjA 238 56.86 3b3qE 197 58.34 b.29.1.4 154813 2k1fA 88 61.53 2i5fA 109 63.53 b.55.1.1 147512 1shsA 147 64.02 b.15.1.1 23675 2pifA 276 64.03 d.382.1.1 149509 1pdkB 157 64.23 b.2.3.2 22427 2q3qA 122 67.84 d.129.3.1 139799 1w6nA 134 68.17 b.29.1.3 114275 3enuA 114 69.25 3kxwA 590 69.65 1y2tA 142 73.04 b.97.1.2 116407 3cdzA 754 74.26 1ceeB 59 74.67 1o1yA 239 75.73 c.23.16.1 86554 2r55A 231 76.73 1c1lA 136 78.87 b.29.1.3 24219 1pk6C 129 80.04 b.22.1.1 94803 1eazA 125 80.67 b.55.1.1 70113 2shpA 525 80.71 c.45.1.2,d.93.1.1,d.93.1.1 32683,40533,40534 3hihA 223 81.53 1fmtA 314 81.74 b.46.1.1,c.65.1.1 25758,34174 1khoA 370 82.39 a.124.1.1,b.12.1.3 72489,72490 2k8hA 110 84.76 3entA 117 85.19 1v8hA 107 85.27 b.1.18.19 119870 1edgA 380 86.25 c.1.8.3 28807 2zglA 167 86.99