# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3h3lA 241 3.86e-36 3hbkA 245 9.98e-36 3immA 201 2.19e-31 1gbg 214 0.000875 1dypA 271 0.003837 b.29.1.2 24185 2hykA 245 0.004268 1oq1A 223 0.007317 b.29.1.17 93408 2ayh 214 0.007378 3gneA 252 0.01401 1uaiA 224 0.01650 b.29.1.18 107761 1a8d 452 0.02698 1upsA 420 0.04303 b.29.1.2,b.42.2.3 113394,113395 2v73A 191 0.06027 1epwA 1290 0.06901 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 2vy0A 264 0.06984 2uwaA 274 0.07503 1c4rA 182 0.07646 b.29.1.4 24229 2vxrA 482 0.08271 3hmyA 450 0.08914 1gbgA 214 0.09289 b.29.1.2 24171 1umzA 278 0.1029 b.29.1.2 99639 1pz7A 204 0.1050 b.29.1.4 95405 3bodA 178 0.1234 1d0hA 469 0.2676 b.29.1.6,b.42.4.2 24265,25610 1kdkA 177 0.2797 b.29.1.4 72351 3ecqA 1531 0.2908 1diwA 441 0.3038 b.29.1.6,b.42.4.2 24264,25609 2ayhA 214 0.3610 b.29.1.2 24172 1qu0A 191 0.4375 b.29.1.4 24225 2nn8A 138 0.4421 b.29.1.3 138392 1a8dA 452 0.4804 b.29.1.6,b.42.4.2 24262,25607 3b3qE 197 0.6235 b.29.1.4 154813 1ajkA 214 0.8028 b.29.1.2 24176 2r16A 182 0.8292 1h30A 422 0.9829 b.29.1.4,b.29.1.4 76604,76605 3hr9A 241 1.020 3glaA 100 1.024 3juuA 280 1.269 1x99A 145 1.447 b.97.1.2 114978 1cpnA 208 1.447 b.29.1.2 24175 2jd4A 383 1.505 1hxnA 219 1.617 b.66.1.1 27529 1a3k 137 1.643 2ofcA 142 1.656 1lcl 142 1.707 2d6mA 159 1.777 2h0bA 184 1.877 2ealA 148 1.952 1sltA 134 1.983 b.29.1.3 24186 1gzwA 134 2.149 b.29.1.3 90535 2vu9A 444 2.203 3kycD 97 2.382 1b09A 206 2.476 b.29.1.5 24247 1bkzA 135 2.480 b.29.1.3 24202 1mveA 243 2.698 b.29.1.2 85140 1f5fA 205 3.037 b.29.1.4 24222 1y2tA 142 3.273 b.97.1.2 116407 2r0hA 164 3.530 1kjlA 146 3.554 b.29.1.3 118689 1nu5A 370 3.808 c.1.11.2,d.54.1.1 92183,92184 2erfA 209 3.886 b.29.1.4 132287 1hdkA 141 4.098 b.29.1.3 65807 3ilfA 268 4.169 1mucA 373 4.181 c.1.11.2,d.54.1.1 29236,38880 1wm3A 72 4.591 d.15.1.1 114736 1ww7A 160 4.935 1gmeA 151 5.022 b.15.1.1 65305 1d2sA 170 5.721 b.29.1.4 24221 2zzjA 238 5.856 1gwmA 153 5.878 b.18.1.19 83348 2cwsA 237 6.031 3flpA 217 6.096 2uyzB 79 6.249 d.15.1.1 140039 2jg9C 131 6.378 b.22.1.1 148047 3kydD 115 7.246 2durA 253 7.353 3dgtA 280 7.355 1euvB 86 8.027 d.15.1.1 37598 2zhnA 148 8.061 2kd2A 94 8.125 1fgyA 127 8.538 b.55.1.1 26976 1c28A 135 9.98 b.22.1.1 23857 1uldA 150 11.21 b.29.1.3 99545 1ajoA 214 11.42 b.29.1.2 24179 3duiA 135 12.06 1axkA 394 12.41 b.29.1.2,b.29.1.11 24181,24315 3b9cA 144 12.69 2brfA 110 17.38 b.26.1.2 128996 1dykA 394 17.43 b.29.1.4,b.29.1.4 24223,24224 3kxwA 590 17.48 2q86A 229 18.37 1a78A 134 18.67 b.29.1.3 24212 3daaA 277 19.19 e.17.1.1 43272 1shaA 104 19.71 d.93.1.1 40424 1o4yA 288 19.72 b.29.1.2 92473 2j8gA 339 20.01 b.109.1.1,c.1.8.8 147915,147916 1dfcA 493 20.10 b.42.5.1,b.42.5.1,b.42.5.1,b.42.5.1 25616,25617,25618,25619 1h8gA 95 20.20 b.109.1.1 65735 1is3A 135 20.28 b.29.1.3 76773 1d1rA 116 20.85 d.64.1.1 39548 1c1lA 136 21.48 b.29.1.3 24219 2shpA 525 21.87 c.45.1.2,d.93.1.1,d.93.1.1 32683,40533,40534 2jxxA 97 21.91 1daaA 282 22.30 e.17.1.1 43270 1gof 639 22.32 1a0gA 282 23.99 e.17.1.1 43276 1cs8A 316 24.03 d.3.1.1 37065 2ox4A 403 24.68 1sacA 204 24.73 b.29.1.5 24237 1eo1A 124 25.12 c.55.5.1 33739 3a4rA 79 25.53 3ikwA 374 25.74 3km5A 180 25.84 1pdkB 157 25.96 b.2.3.2 22427 1pk6C 129 26.79 b.22.1.1 94803 1i82A 189 28.69 b.1.9.2 61937 2a6zA 222 29.36 b.29.1.13 126319 1yeyA 444 29.76 c.1.11.2,d.54.1.1 116664,116665 2j44A 217 30.06 b.3.1.3,b.3.1.3 147868,147869 2b9uA 176 30.10 2w08A 204 30.64 3cdzA 754 30.74 1ggxA 223 31.03 d.22.1.1 38367 1jhnA 424 31.04 b.104.1.1,b.29.1.12 66722,70060 2oxgA 108 31.18 1uisA 231 31.33 d.22.1.1 99431 2bibA 547 32.76 b.109.1.1,d.157.1.8 128581,128582 2h5uA 499 33.48 1c3hA 137 33.70 b.22.1.1 90405 1w6nA 134 34.73 b.29.1.3 114275 3bp5A 117 34.74 b.1.1.1 155462 1gycA 499 35.65 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 2zogA 479 36.60 2wjsA 608 38.31 2hxtA 441 39.15 1r0mA 375 39.52 c.1.11.2,d.54.1.1 104747,104748 2gw4B 162 40.07 2f7lA 455 40.84 2o5hA 136 40.95 d.363.1.1 148599 3hn9A 123 41.36 2zexA 147 43.01 2dfuA 264 43.55 1aozA 552 43.57 b.6.1.3,b.6.1.3,b.6.1.3 23124,23125,23126 1shsA 147 43.60 b.15.1.1 23675 1ceeB 59 43.69 2k1fA 88 44.88 3luuA 101 46.77 1u5dA 108 47.14 b.55.1.1 119536 2glfA 450 47.25 3fpxA 499 48.18 2zc8A 369 49.35 2vm8A 501 50.32 1xh3A 276 52.54 b.1.1.2,d.19.1.1 115287,115288 2p14A 192 52.98 3ks7A 397 54.03 3lulA 272 54.41 2wd6A 349 54.65 2i5fA 109 54.87 b.55.1.1 147512 1o1yA 239 55.34 c.23.16.1 86554 1u2bA 138 57.64 b.55.1.1 119474 3kljA 385 58.13 3dwlC 377 59.77 1j1tA 233 60.43 b.29.1.18 90771 2vvfA 269 60.45 2rikA 284 61.09 3bikB 134 62.03 b.1.1.1 155309 1ca1 370 62.32 2a6vA 226 63.73 b.29.1.13 126312 1sjdA 368 64.48 c.1.11.2,d.54.1.1 105632,105633 3ct2A 382 64.69 1ifrA 121 65.15 b.1.16.1 71203 1yifA 533 65.33 b.29.1.23,b.67.2.1 123283,123284 3l4bC 218 66.69 2uurA 245 66.86 1hlcA 129 67.62 b.29.1.3 24208 3fv9A 386 67.69 1gp0A 143 69.23 b.64.1.1 70300 1wchA 315 69.34 c.45.1.2 114508 2bnqD 203 71.01 b.1.1.1,b.1.1.2 144996,144997 3lb8A 436 71.42 3dgbA 382 72.01 1wrvA 308 72.20 1vjhA 122 72.65 d.129.3.1 100811 1khoA 370 72.83 a.124.1.1,b.12.1.3 72489,72490 1wzoA 246 74.15 2c0zA 216 74.40 b.82.1.1 129615 3cswA 285 75.49 1pk6A 133 75.84 b.22.1.1 94801 1o13A 136 76.04 c.55.5.1 80762 1mz5A 638 77.03 b.29.1.15,b.68.1.1 79679,79680 3b4tA 262 78.60 3kw7A 502 78.98 2pmqA 377 81.77 2r31A 239 82.39 d.381.1.1 151546 1hcxA 127 82.90 b.109.1.1 65800 2ac1A 541 83.50 3d3aA 612 86.55 2eiyA 308 87.25 1k4nA 192 87.33 d.32.1.5 72059 3i4kA 383 87.92 1ktzB 122 88.09 g.7.1.3 68868 1m9zA 111 89.18 g.7.1.3 78881 1gvmA 136 89.59 b.109.1.1 70612 2bjrA 368 89.82 b.169.1.1,b.169.1.1 128628,128629