# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3h3lA 241 1.52e-30 3hbkA 245 6.86e-30 3immA 201 7.61e-27 1gbg 214 0.001702 1dypA 271 0.004090 b.29.1.2 24185 2hykA 245 0.006666 1a8d 452 0.01196 2ayh 214 0.01248 1gbgA 214 0.02647 b.29.1.2 24171 3gneA 252 0.02716 2v73A 191 0.03281 1umzA 278 0.06417 b.29.1.2 99639 2uwaA 274 0.06715 1oq1A 223 0.07336 b.29.1.17 93408 2vy0A 264 0.07366 1upsA 420 0.08412 b.29.1.2,b.42.2.3 113394,113395 1d0hA 469 0.09059 b.29.1.6,b.42.4.2 24265,25610 1diwA 441 0.09755 b.29.1.6,b.42.4.2 24264,25609 1epwA 1290 0.1061 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 2vxrA 482 0.1473 2ayhA 214 0.1512 b.29.1.2 24172 1uaiA 224 0.2022 b.29.1.18 107761 1pz7A 204 0.2238 b.29.1.4 95405 3hmyA 450 0.2303 1c4rA 182 0.2541 b.29.1.4 24229 3bodA 178 0.3184 1ajkA 214 0.6678 b.29.1.2 24176 1kdkA 177 0.7253 b.29.1.4 72351 1cpnA 208 0.9797 b.29.1.2 24175 3ecqA 1531 1.151 3hr9A 241 1.222 1a8dA 452 1.384 b.29.1.6,b.42.4.2 24262,25607 3ilfA 268 1.518 1ww7A 160 1.654 3juuA 280 1.918 1qu0A 191 2.054 b.29.1.4 24225 3b3qE 197 2.112 b.29.1.4 154813 2h0bA 184 2.151 3glaA 100 2.935 1mveA 243 2.985 b.29.1.2 85140 2d6mA 159 3.128 1sltA 134 3.178 b.29.1.3 24186 2r0hA 164 3.280 2nn8A 138 3.511 b.29.1.3 138392 2vu9A 444 3.593 2r16A 182 3.874 2ealA 148 4.038 3kycD 97 4.259 1uldA 150 4.542 b.29.1.3 99545 2jg9C 131 4.638 b.22.1.1 148047 1ajoA 214 4.778 b.29.1.2 24179 1gwmA 153 5.065 b.18.1.19 83348 1a3k 137 5.127 2durA 253 5.164 2jd4A 383 5.412 2o5hA 136 5.916 d.363.1.1 148599 1x99A 145 6.112 b.97.1.2 114978 1fgyA 127 6.115 b.55.1.1 26976 1b09A 206 6.207 b.29.1.5 24247 1gzwA 134 6.295 b.29.1.3 90535 1hxnA 219 6.975 b.66.1.1 27529 1axkA 394 7.117 b.29.1.2,b.29.1.11 24181,24315 2ofcA 142 7.719 1h30A 422 7.801 b.29.1.4,b.29.1.4 76604,76605 3kydD 115 8.385 1c28A 135 8.586 b.22.1.1 23857 3flpA 217 9.188 1is3A 135 10.30 b.29.1.3 76773 2k1fA 88 11.51 1f5fA 205 11.54 b.29.1.4 24222 1i82A 189 11.78 b.1.9.2 61937 2uyzB 79 13.02 d.15.1.1 140039 1yifA 533 13.14 b.29.1.23,b.67.2.1 123283,123284 1lcl 142 13.41 1bkzA 135 13.41 b.29.1.3 24202 1mucA 373 15.54 c.1.11.2,d.54.1.1 29236,38880 3dgtA 280 15.55 2kd2A 94 16.67 1d2sA 170 17.73 b.29.1.4 24221 2a6zA 222 18.09 b.29.1.13 126319 1jhnA 424 18.72 b.104.1.1,b.29.1.12 66722,70060 3a4rA 79 19.13 1shsA 147 19.47 b.15.1.1 23675 1wm3A 72 19.55 d.15.1.1 114736 3cdzA 754 19.60 2zhnA 148 19.93 1kjlA 146 20.11 b.29.1.3 118689 1pls 113 20.29 1o4yA 288 20.59 b.29.1.2 92473 1c3hA 137 22.99 b.22.1.1 90405 1euvB 86 24.48 d.15.1.1 37598 1a78A 134 25.72 b.29.1.3 24212 3b9cA 144 26.01 1hdkA 141 27.10 b.29.1.3 65807 1c1lA 136 27.32 b.29.1.3 24219 2w08A 204 27.70 2erfA 209 27.88 b.29.1.4 132287 1sacA 204 27.94 b.29.1.5 24237 1faoA 126 29.31 b.55.1.1 26974 2zglA 167 30.82 2k8hA 110 32.00 2uurA 245 32.49 1y2tA 142 32.72 b.97.1.2 116407 2bibA 547 33.39 b.109.1.1,d.157.1.8 128581,128582 3entA 117 34.38 1uuzA 137 34.42 d.233.1.1 100024 1a0gA 282 34.62 e.17.1.1 43276 1edgA 380 35.79 c.1.8.3 28807 2dfuA 264 37.79 3ikwA 374 38.03 1gmeA 151 38.07 b.15.1.1 65305 1u5dA 108 38.37 b.55.1.1 119536 2cwsA 237 38.62 2f7lA 455 38.79 1pk6B 132 39.99 b.22.1.1 94802 1pk6C 129 42.09 b.22.1.1 94803 1daaA 282 44.24 e.17.1.1 43270 1eazA 125 45.16 b.55.1.1 70113 3daaA 277 45.95 e.17.1.1 43272 2jxxA 97 45.97 1eo1A 124 46.43 c.55.5.1 33739 2or0A 414 47.67 2iayA 114 47.86 d.376.1.1 147592 3kxwA 590 48.97 1ggxA 223 49.27 d.22.1.1 38367 1d1rA 116 49.70 d.64.1.1 39548 1o91A 178 50.15 b.22.1.1 92656 3bp5A 117 51.31 b.1.1.1 155462 2gw4B 162 52.96 3gm8A 801 54.20 1vjhA 122 55.06 d.129.3.1 100811 3enuA 114 55.52 2zogA 479 55.91 1ca1 370 56.09 1h8gA 95 56.16 b.109.1.1 65735 1hlcA 129 56.97 b.29.1.3 24208 2cl2A 298 58.59 1pdkB 157 59.92 b.2.3.2 22427 1ceeB 59 61.64 1uisA 231 64.06 d.22.1.1 99431 2vw2A 697 64.48 2shpA 525 64.76 c.45.1.2,d.93.1.1,d.93.1.1 32683,40533,40534 2a9gA 418 65.08 d.126.1.4 126435 2oxgA 108 65.34 2a6vA 226 65.96 b.29.1.13 126312 1w6nA 134 68.46 b.29.1.3 114275 2wkkA 150 69.05 2fpoA 202 69.30 c.66.1.46 133909 1shaA 104 69.71 d.93.1.1 40424 2p14A 192 70.12 1m9zA 111 70.93 g.7.1.3 78881 2j2zB 173 72.18 b.2.3.2 145642 3cswA 285 73.70 3bikB 134 74.08 b.1.1.1 155309 3hihA 223 74.87 1wzoA 246 75.26 2vvfA 269 75.95 1y88A 199 77.17 a.60.4.3,c.52.1.30 116560,116561 1u2bA 138 77.86 b.55.1.1 119474 1ktzB 122 78.61 g.7.1.3 68868 1xh3A 276 82.86 b.1.1.2,d.19.1.1 115287,115288 1o1yA 239 83.77 c.23.16.1 86554 2ox4A 403 84.21 1o13A 136 85.20 c.55.5.1 80762 1dykA 394 85.44 b.29.1.4,b.29.1.4 24223,24224 1mt6A 280 87.73 b.76.2.1,b.85.7.1 79446,79447 1g1kA 143 87.97 b.2.2.2 22404 2c1sA 126 88.69 3luuA 101 88.75