# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3h3lA 241 9.10e-30 3hbkA 245 3.19e-29 3immA 201 3.92e-26 1gbg 214 0.003496 1dypA 271 0.01016 b.29.1.2 24185 1a8d 452 0.01796 2ayh 214 0.02658 3gneA 252 0.03371 2hykA 245 0.04194 2v73A 191 0.05014 1gbgA 214 0.08524 b.29.1.2 24171 1d0hA 469 0.1251 b.29.1.6,b.42.4.2 24265,25610 1upsA 420 0.1430 b.29.1.2,b.42.2.3 113394,113395 1umzA 278 0.1496 b.29.1.2 99639 1diwA 441 0.1879 b.29.1.6,b.42.4.2 24264,25609 1epwA 1290 0.1911 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1oq1A 223 0.2126 b.29.1.17 93408 2uwaA 274 0.2230 2vxrA 482 0.3095 2ayhA 214 0.3754 b.29.1.2 24172 2vy0A 264 0.4882 3hmyA 450 0.6262 1uaiA 224 0.6334 b.29.1.18 107761 1pz7A 204 0.7929 b.29.1.4 95405 1c4rA 182 0.9657 b.29.1.4 24229 3bodA 178 1.466 1cpnA 208 1.620 b.29.1.2 24175 3ilfA 268 1.625 3hr9A 241 1.770 3ecqA 1531 2.176 1ajkA 214 2.281 b.29.1.2 24176 1kdkA 177 2.404 b.29.1.4 72351 1a8dA 452 2.811 b.29.1.6,b.42.4.2 24262,25607 3juuA 280 3.887 2vu9A 444 4.592 2ealA 148 4.602 1mveA 243 4.961 b.29.1.2 85140 1ww7A 160 4.972 2d6mA 159 5.136 2nn8A 138 5.481 b.29.1.3 138392 3kycD 97 5.768 1gwmA 153 6.315 b.18.1.19 83348 1uldA 150 6.736 b.29.1.3 99545 2o5hA 136 7.703 d.363.1.1 148599 1sltA 134 8.181 b.29.1.3 24186 1x99A 145 8.387 b.97.1.2 114978 1b09A 206 8.406 b.29.1.5 24247 1c28A 135 8.712 b.22.1.1 23857 1qu0A 191 8.875 b.29.1.4 24225 2durA 253 9.077 3glaA 100 9.159 1a3k 137 9.278 2jg9C 131 9.281 b.22.1.1 148047 2r0hA 164 9.831 1fgyA 127 10.98 b.55.1.1 26976 1gzwA 134 11.54 b.29.1.3 90535 3b3qE 197 11.57 b.29.1.4 154813 1jhnA 424 12.47 b.104.1.1,b.29.1.12 66722,70060 3kydD 115 12.55 3cdzA 754 12.59 2r16A 182 12.80 2ofcA 142 14.52 2h0bA 184 14.82 2jd4A 383 15.94 1ajoA 214 16.29 b.29.1.2 24179 1hxnA 219 16.50 b.66.1.1 27529 2k1fA 88 17.01 2kd2A 94 17.85 1bkzA 135 18.05 b.29.1.3 24202 2a6zA 222 19.07 b.29.1.13 126319 2f7lA 455 19.72 1lcl 142 20.08 2uyzB 79 20.18 d.15.1.1 140039 1h30A 422 20.70 b.29.1.4,b.29.1.4 76604,76605 1is3A 135 21.68 b.29.1.3 76773 1wm3A 72 24.15 d.15.1.1 114736 1c3hA 137 25.49 b.22.1.1 90405 1mucA 373 26.41 c.1.11.2,d.54.1.1 29236,38880 1kjlA 146 28.54 b.29.1.3 118689 1shaA 104 29.66 d.93.1.1 40424 1yifA 533 29.80 b.29.1.23,b.67.2.1 123283,123284 2or0A 414 31.90 2zhnA 148 32.16 1pk6B 132 32.35 b.22.1.1 94802 3a4rA 79 32.38 3flpA 217 33.57 1i82A 189 34.17 b.1.9.2 61937 1euvB 86 35.20 d.15.1.1 37598 2dfuA 264 36.48 1d1rA 116 37.09 d.64.1.1 39548 2k8hA 110 39.15 1axkA 394 39.61 b.29.1.2,b.29.1.11 24181,24315 1mt6A 280 42.19 b.76.2.1,b.85.7.1 79446,79447 3ikwA 374 42.37 1shsA 147 42.39 b.15.1.1 23675 1hdkA 141 42.76 b.29.1.3 65807 1pls 113 42.76 2iayA 114 43.19 d.376.1.1 147592 2w08A 204 44.69 1f5fA 205 45.98 b.29.1.4 24222 3entA 117 46.01 1sacA 204 46.58 b.29.1.5 24237 3dgtA 280 47.06 1eo1A 124 48.42 c.55.5.1 33739 1edgA 380 50.29 c.1.8.3 28807 3bp5A 117 50.61 b.1.1.1 155462 1ceeB 59 50.66 2jxxA 97 50.78 2gw4B 162 52.73 3b9cA 144 53.89 2uurA 245 55.54 1d2sA 170 55.83 b.29.1.4 24221 1pk6C 129 56.06 b.22.1.1 94803 1faoA 126 56.47 b.55.1.1 26974 2c1sA 126 58.00 1vjhA 122 59.77 d.129.3.1 100811 1xh3A 276 59.79 b.1.1.2,d.19.1.1 115287,115288 2a9gA 418 60.31 d.126.1.4 126435 1fsoA 139 62.48 b.1.18.8 60007 3gm8A 801 64.01 1o1yA 239 64.80 c.23.16.1 86554 1o91A 178 67.76 b.22.1.1 92656 3luuA 101 68.28 1a78A 134 68.46 b.29.1.3 24212 2ox4A 403 69.01 2fpoA 202 69.68 c.66.1.46 133909 3kxwA 590 71.79 1y88A 199 71.82 a.60.4.3,c.52.1.30 116560,116561 1o13A 136 73.78 c.55.5.1 80762 1eazA 125 74.09 b.55.1.1 70113 2zglA 167 74.30 1klfB 279 75.34 b.2.3.2,b.2.3.2 72684,72685 1kmtA 141 76.58 b.1.18.8 77442 2a6vA 226 77.80 b.29.1.13 126312 1i8aA 189 77.90 b.1.9.2 61951 3enuA 114 77.91 2cy5A 140 79.04 b.55.1.2 131018 2oxgA 108 83.25 1fmtA 314 83.64 b.46.1.1,c.65.1.1 25758,34174 2uy6B 163 83.75 b.2.3.2 145763 1gmeA 151 83.81 b.15.1.1 65305 1m9zA 111 84.73 g.7.1.3 78881 1wzoA 246 84.97 1pdkB 157 85.95 b.2.3.2 22427 1ca1 370 87.73 3fpxA 499 88.32 3dtqA 186 88.36 2shpA 525 89.03 c.45.1.2,d.93.1.1,d.93.1.1 32683,40533,40534