# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3h3lA 241 3.35e-30 3hbkA 245 1.73e-29 3immA 201 1.98e-26 1gbg 214 0.002738 1dypA 271 0.008553 b.29.1.2 24185 1a8d 452 0.01909 2ayh 214 0.02229 2hykA 245 0.02856 3gneA 252 0.03175 2v73A 191 0.05229 1gbgA 214 0.06037 b.29.1.2 24171 1umzA 278 0.07146 b.29.1.2 99639 1upsA 420 0.1028 b.29.1.2,b.42.2.3 113394,113395 1d0hA 469 0.1697 b.29.1.6,b.42.4.2 24265,25610 1epwA 1290 0.1894 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 2uwaA 274 0.2157 1diwA 441 0.2219 b.29.1.6,b.42.4.2 24264,25609 2vxrA 482 0.2330 1oq1A 223 0.2651 b.29.1.17 93408 2ayhA 214 0.2943 b.29.1.2 24172 2vy0A 264 0.3989 1uaiA 224 0.5428 b.29.1.18 107761 1pz7A 204 0.6074 b.29.1.4 95405 1c4rA 182 0.7901 b.29.1.4 24229 3bodA 178 0.9680 3hmyA 450 1.002 3hr9A 241 1.114 1cpnA 208 1.301 b.29.1.2 24175 3ecqA 1531 1.492 1ajkA 214 1.559 b.29.1.2 24176 3ilfA 268 1.745 1kdkA 177 2.214 b.29.1.4 72351 1mveA 243 3.712 b.29.1.2 85140 3kycD 97 3.848 2d6mA 159 3.925 1a8dA 452 4.083 b.29.1.6,b.42.4.2 24262,25607 3juuA 280 4.460 2vu9A 444 4.858 3glaA 100 5.040 1gwmA 153 5.403 b.18.1.19 83348 2ealA 148 5.438 1ww7A 160 5.780 2nn8A 138 5.894 b.29.1.3 138392 2jg9C 131 6.043 b.22.1.1 148047 1uldA 150 6.266 b.29.1.3 99545 1sltA 134 6.821 b.29.1.3 24186 1b09A 206 7.297 b.29.1.5 24247 2durA 253 7.393 2o5hA 136 7.445 d.363.1.1 148599 1x99A 145 7.736 b.97.1.2 114978 3b3qE 197 7.810 b.29.1.4 154813 3kydD 115 7.930 1c28A 135 8.120 b.22.1.1 23857 1qu0A 191 8.298 b.29.1.4 24225 2r0hA 164 8.540 3cdzA 754 9.123 1hxnA 219 9.404 b.66.1.1 27529 2h0bA 184 9.480 1a3k 137 9.703 2jd4A 383 10.38 2uyzB 79 11.13 d.15.1.1 140039 2k1fA 88 12.87 1ajoA 214 13.09 b.29.1.2 24179 2ofcA 142 13.36 1fgyA 127 13.91 b.55.1.1 26976 1jhnA 424 14.05 b.104.1.1,b.29.1.12 66722,70060 2r16A 182 14.29 1yifA 533 14.49 b.29.1.23,b.67.2.1 123283,123284 1gzwA 134 14.99 b.29.1.3 90535 1wm3A 72 15.29 d.15.1.1 114736 1bkzA 135 16.52 b.29.1.3 24202 1mucA 373 18.10 c.1.11.2,d.54.1.1 29236,38880 2f7lA 455 18.20 1pk6B 132 19.84 b.22.1.1 94802 3a4rA 79 20.05 2kd2A 94 20.20 1c3hA 137 20.25 b.22.1.1 90405 1euvB 86 20.67 d.15.1.1 37598 3flpA 217 23.41 1is3A 135 24.25 b.29.1.3 76773 1shsA 147 25.49 b.15.1.1 23675 2a6zA 222 26.26 b.29.1.13 126319 1i82A 189 28.90 b.1.9.2 61937 2k8hA 110 29.08 3ikwA 374 29.93 1h30A 422 31.07 b.29.1.4,b.29.1.4 76604,76605 1edgA 380 31.12 c.1.8.3 28807 2zhnA 148 31.15 1lcl 142 31.21 1kjlA 146 32.44 b.29.1.3 118689 1d1rA 116 32.90 d.64.1.1 39548 1gmeA 151 34.84 b.15.1.1 65305 1sacA 204 34.88 b.29.1.5 24237 1axkA 394 35.10 b.29.1.2,b.29.1.11 24181,24315 3dgtA 280 35.83 1f5fA 205 36.84 b.29.1.4 24222 2jxxA 97 39.88 2gw4B 162 40.10 1eo1A 124 41.98 c.55.5.1 33739 1shaA 104 42.50 d.93.1.1 40424 1pls 113 42.72 3entA 117 43.49 2iayA 114 44.10 d.376.1.1 147592 2dfuA 264 46.02 2uurA 245 46.51 2a9gA 418 46.57 d.126.1.4 126435 2or0A 414 46.75 1vjhA 122 48.00 d.129.3.1 100811 2w08A 204 50.54 3b9cA 144 50.58 1ceeB 59 51.28 3bp5A 117 55.90 b.1.1.1 155462 2fpoA 202 56.20 c.66.1.46 133909 1faoA 126 56.28 b.55.1.1 26974 2c1sA 126 56.85 1d2sA 170 56.99 b.29.1.4 24221 1xh3A 276 57.13 b.1.1.2,d.19.1.1 115287,115288 1pk6C 129 57.53 b.22.1.1 94803 1c1lA 136 61.27 b.29.1.3 24219 2ox4A 403 61.64 1o1yA 239 61.72 c.23.16.1 86554 3luuA 101 63.14 1a78A 134 63.64 b.29.1.3 24212 2zogA 479 63.88 1o91A 178 63.96 b.22.1.1 92656 1a0gA 282 66.71 e.17.1.1 43276 1ggxA 223 67.76 d.22.1.1 38367 1mt6A 280 69.83 b.76.2.1,b.85.7.1 79446,79447 3enuA 114 69.83 1fsoA 139 69.86 b.1.18.8 60007 1o13A 136 73.06 c.55.5.1 80762 2brfA 110 74.07 b.26.1.2 128996 1hdkA 141 76.15 b.29.1.3 65807 1fmtA 314 77.69 b.46.1.1,c.65.1.1 25758,34174 1kmtA 141 78.91 b.1.18.8 77442 2cl2A 298 80.06 2erfA 209 80.35 b.29.1.4 132287 1mhxA 65 84.50 d.15.7.1 79134 3kljA 385 85.84 2vw2A 697 86.38 1eazA 125 86.44 b.55.1.1 70113 1ca1 370 87.64 2cy5A 140 88.22 b.55.1.2 131018 1pdkB 157 88.99 b.2.3.2 22427 1h8gA 95 89.43 b.109.1.1 65735 1y88A 199 89.71 a.60.4.3,c.52.1.30 116560,116561 1oi6A 205 89.89 b.82.1.1 103940