# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3h3lA 241 1.09e-31 3hbkA 245 1.49e-31 3immA 201 2.90e-28 1gbg 214 0.003163 1dypA 271 0.004536 b.29.1.2 24185 2ayh 214 0.02486 3gneA 252 0.03386 2hykA 245 0.06004 1uaiA 224 0.06422 b.29.1.18 107761 1oq1A 223 0.09212 b.29.1.17 93408 3bodA 178 0.1098 2v73A 191 0.1306 1pz7A 204 0.1326 b.29.1.4 95405 2vy0A 264 0.1463 3b3qE 197 0.2618 b.29.1.4 154813 1c4rA 182 0.3162 b.29.1.4 24229 1a8d 452 0.3494 1gbgA 214 0.4218 b.29.1.2 24171 1ww7A 160 0.7231 1upsA 420 0.7344 b.29.1.2,b.42.2.3 113394,113395 2r0hA 164 0.7746 2ealA 148 0.8712 1gzwA 134 0.8944 b.29.1.3 90535 2d6mA 159 1.005 1kdkA 177 1.130 b.29.1.4 72351 1sltA 134 1.253 b.29.1.3 24186 2nn8A 138 1.690 b.29.1.3 138392 3ecqA 1531 1.787 1a3k 137 1.803 1umzA 278 1.919 b.29.1.2 99639 1cpnA 208 2.044 b.29.1.2 24175 1ajoA 214 2.067 b.29.1.2 24179 1qu0A 191 2.193 b.29.1.4 24225 2vxrA 482 2.226 3kycD 97 2.244 3hmyA 450 2.299 2ayhA 214 2.337 b.29.1.2 24172 1epwA 1290 2.716 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 2h0bA 184 2.783 1bkzA 135 2.982 b.29.1.3 24202 2durA 253 3.111 1ajkA 214 3.348 b.29.1.2 24176 1lcl 142 3.371 1wm3A 72 3.799 d.15.1.1 114736 1kjlA 146 3.950 b.29.1.3 118689 1d0hA 469 4.057 b.29.1.6,b.42.4.2 24265,25610 1mveA 243 4.098 b.29.1.2 85140 2r16A 182 4.692 1uldA 150 4.901 b.29.1.3 99545 2uyzB 79 5.148 d.15.1.1 140039 2jd4A 383 5.274 2zhnA 148 5.380 1hdkA 141 5.734 b.29.1.3 65807 1gwmA 153 5.904 b.18.1.19 83348 3kydD 115 6.074 3ilfA 268 6.187 1is3A 135 6.349 b.29.1.3 76773 3hr9A 241 6.685 1c28A 135 7.030 b.22.1.1 23857 1nu5A 370 7.308 c.1.11.2,d.54.1.1 92183,92184 3juuA 280 7.364 1diwA 441 7.537 b.29.1.6,b.42.4.2 24264,25609 1ceeB 59 7.883 3b9cA 144 8.940 1i82A 189 9.398 b.1.9.2 61937 2cwsA 237 9.819 1a8dA 452 9.917 b.29.1.6,b.42.4.2 24262,25607 2zglA 167 10.85 1euvB 86 11.12 d.15.1.1 37598 2jg9C 131 12.59 b.22.1.1 148047 1h30A 422 12.75 b.29.1.4,b.29.1.4 76604,76605 1w6nA 134 12.86 b.29.1.3 114275 1f5fA 205 13.03 b.29.1.4 24222 1c3hA 137 14.03 b.22.1.1 90405 2k1fA 88 14.13 2uwaA 274 14.23 1yifA 533 15.27 b.29.1.23,b.67.2.1 123283,123284 3enuA 114 15.54 3duiA 135 16.01 1hlcA 129 16.36 b.29.1.3 24208 2oxgA 108 16.83 3entA 117 16.90 1d2sA 170 17.22 b.29.1.4 24221 1y2tA 142 17.28 b.97.1.2 116407 1mucA 373 18.02 c.1.11.2,d.54.1.1 29236,38880 1a78A 134 18.16 b.29.1.3 24212 1pls 113 18.28 3a4rA 79 18.89 1pk6B 132 19.14 b.22.1.1 94802 1o4yA 288 20.32 b.29.1.2 92473 1c1lA 136 21.61 b.29.1.3 24219 2ofcA 142 21.74 1x99A 145 21.79 b.97.1.2 114978 2kd2A 94 23.79 1fgyA 127 26.07 b.55.1.1 26976 2iayA 114 26.32 d.376.1.1 147592 2cy5A 140 27.16 b.55.1.2 131018 1t61C 227 31.14 d.169.1.6,d.169.1.6 106533,106534 2a6zA 222 34.45 b.29.1.13 126319 3flpA 217 35.22 2jxxA 97 36.36 1sacA 204 37.26 b.29.1.5 24237 1pk6C 129 39.85 b.22.1.1 94803 2ox4A 403 39.99 1t61A 229 41.94 d.169.1.6,d.169.1.6 106529,106530 1u5dA 108 43.77 b.55.1.1 119536 1v8hA 107 43.85 b.1.18.19 119870 2erfA 209 44.25 b.29.1.4 132287 2w08A 204 45.25 1sjdA 368 45.37 c.1.11.2,d.54.1.1 105632,105633 1clxA 347 45.51 c.1.8.3 28899 2vvfA 269 46.19 3ik4A 365 46.77 1yeyA 444 47.39 c.1.11.2,d.54.1.1 116664,116665 1i8aA 189 48.85 b.1.9.2 61951 2podA 410 52.92 1ggxA 223 53.31 d.22.1.1 38367 1b09A 206 53.43 b.29.1.5 24247 2oz8A 389 54.31 3luuA 101 55.16 1dynA 125 56.15 b.55.1.1 26955 2qdeA 397 56.18 1dykA 394 57.23 b.29.1.4,b.29.1.4 24223,24224 2a9gA 418 57.81 d.126.1.4 126435 2e4qA 109 58.04 3glaA 100 58.21 1o91A 178 58.27 b.22.1.1 92656 2zogA 479 58.89 3goeA 82 61.19 1faoA 126 61.48 b.55.1.1 26974 2o5hA 136 63.14 d.363.1.1 148599 2a6vA 226 63.16 b.29.1.13 126312 1eo1A 124 65.45 c.55.5.1 33739 1xhhA 91 65.90 3lmnA 135 66.04 2gw4B 162 66.93 1xh3A 276 68.89 b.1.1.2,d.19.1.1 115287,115288 1li1A 229 69.29 d.169.1.6,d.169.1.6 73898,73899 1d1rA 116 69.47 d.64.1.1 39548 1ifrA 121 69.91 b.1.16.1 71203 2i5fA 109 72.56 b.55.1.1 147512 1kxlA 199 73.84 b.40.4.3 73155 1pdkB 157 74.84 b.2.3.2 22427 2vjxA 846 74.87 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 153203,153204,153205,153206,153207 1lm8B 118 75.47 d.15.1.1 74033 1fsoA 139 75.59 b.1.18.8 60007 2byoA 207 75.81 b.125.1.3 129497 3butA 136 75.84 1mdlA 359 76.05 c.1.11.2,d.54.1.1 29247,38891 2wkkA 150 76.64 1kmtA 141 77.21 b.1.18.8 77442 1nbcA 155 77.68 b.2.2.2 22390 1b0b 142 78.55 2hxtA 441 80.28 1jhnA 424 81.33 b.104.1.1,b.29.1.12 66722,70060 2cu3A 64 81.72 d.15.3.2 146428 1gv9A 260 82.38 b.29.1.13 70596 1eazA 125 83.14 b.55.1.1 70113 1ngkA 128 83.30 a.1.1.1 85673 2ac1A 541 85.67 2zexA 147 88.65 3jukA 281 89.33