# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3h3lA 241 1.02e-31 3hbkA 245 3.65e-31 3immA 201 7.21e-28 1gbg 214 0.000591 2ayh 214 0.003916 1dypA 271 0.003945 b.29.1.2 24185 1a8d 452 0.01586 1upsA 420 0.02508 b.29.1.2,b.42.2.3 113394,113395 2hykA 245 0.02524 1gbgA 214 0.03411 b.29.1.2 24171 1epwA 1290 0.04043 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 2v73A 191 0.04422 3gneA 252 0.05281 1umzA 278 0.07247 b.29.1.2 99639 1d0hA 469 0.07371 b.29.1.6,b.42.4.2 24265,25610 2ayhA 214 0.08181 b.29.1.2 24172 1uaiA 224 0.08219 b.29.1.18 107761 1diwA 441 0.1099 b.29.1.6,b.42.4.2 24264,25609 1oq1A 223 0.1159 b.29.1.17 93408 2vy0A 264 0.1495 2vxrA 482 0.1519 2uwaA 274 0.1771 3hmyA 450 0.2192 1kdkA 177 0.3343 b.29.1.4 72351 3ilfA 268 0.3710 1pz7A 204 0.3767 b.29.1.4 95405 1c4rA 182 0.3886 b.29.1.4 24229 3hr9A 241 0.4215 3bodA 178 0.4556 1cpnA 208 0.4563 b.29.1.2 24175 1ajkA 214 0.4783 b.29.1.2 24176 3ecqA 1531 0.9393 3juuA 280 1.148 1mveA 243 1.421 b.29.1.2 85140 1qu0A 191 1.600 b.29.1.4 24225 1ww7A 160 1.635 2d6mA 159 1.637 1a8dA 452 1.660 b.29.1.6,b.42.4.2 24262,25607 2ealA 148 1.884 3glaA 100 1.918 2h0bA 184 2.039 1hxnA 219 2.071 b.66.1.1 27529 2nn8A 138 2.243 b.29.1.3 138392 2r0hA 164 2.260 2vu9A 444 2.599 1ajoA 214 2.621 b.29.1.2 24179 1b09A 206 3.133 b.29.1.5 24247 2r16A 182 3.304 1lcl 142 3.606 1bkzA 135 3.619 b.29.1.3 24202 2jd4A 383 3.704 3kycD 97 3.989 1sltA 134 4.109 b.29.1.3 24186 1a3k 137 4.274 1uldA 150 4.282 b.29.1.3 99545 3b3qE 197 4.311 b.29.1.4 154813 1x99A 145 4.497 b.97.1.2 114978 2durA 253 4.597 1gwmA 153 5.192 b.18.1.19 83348 1kjlA 146 5.605 b.29.1.3 118689 1gzwA 134 6.004 b.29.1.3 90535 1h30A 422 6.358 b.29.1.4,b.29.1.4 76604,76605 1fgyA 127 6.497 b.55.1.1 26976 1f5fA 205 6.548 b.29.1.4 24222 2ofcA 142 6.626 3kydD 115 7.004 1yifA 533 7.198 b.29.1.23,b.67.2.1 123283,123284 2uurA 245 7.693 2zglA 167 8.089 1hdkA 141 8.312 b.29.1.3 65807 1mucA 373 8.703 c.1.11.2,d.54.1.1 29236,38880 1shsA 147 8.829 b.15.1.1 23675 1d2sA 170 8.965 b.29.1.4 24221 2zhnA 148 8.986 2a6zA 222 9.077 b.29.1.13 126319 2kd2A 94 9.152 2o5hA 136 9.577 d.363.1.1 148599 2zogA 479 9.908 1is3A 135 10.20 b.29.1.3 76773 2uyzB 79 10.25 d.15.1.1 140039 3flpA 217 10.71 1wm3A 72 10.96 d.15.1.1 114736 3b9cA 144 11.58 1c28A 135 12.43 b.22.1.1 23857 2jg9C 131 13.29 b.22.1.1 148047 2erfA 209 13.51 b.29.1.4 132287 1axkA 394 14.29 b.29.1.2,b.29.1.11 24181,24315 1o4yA 288 14.43 b.29.1.2 92473 1euvB 86 16.67 d.15.1.1 37598 3cdzA 754 18.88 1y2tA 142 20.56 b.97.1.2 116407 2k1fA 88 20.81 1i82A 189 22.02 b.1.9.2 61937 2w08A 204 22.21 3a4rA 79 23.53 1faoA 126 23.57 b.55.1.1 26974 1pls 113 25.37 1a78A 134 26.86 b.29.1.3 24212 1c3hA 137 27.56 b.22.1.1 90405 2cy5A 140 28.33 b.55.1.2 131018 1sacA 204 28.74 b.29.1.5 24237 2oxgA 108 29.77 2f7lA 455 30.00 1eazA 125 30.67 b.55.1.1 70113 1u5dA 108 30.83 b.55.1.1 119536 1dykA 394 31.65 b.29.1.4,b.29.1.4 24223,24224 2cwsA 237 31.98 1vjhA 122 31.99 d.129.3.1 100811 2a6vA 226 32.78 b.29.1.13 126312 2vvfA 269 32.98 2bibA 547 33.17 b.109.1.1,d.157.1.8 128581,128582 3bp5A 117 34.07 b.1.1.1 155462 1gmeA 151 36.30 b.15.1.1 65305 2gw4B 162 38.41 2k8hA 110 39.16 1a0gA 282 39.58 e.17.1.1 43276 1o13A 136 39.62 c.55.5.1 80762 1hlcA 129 39.72 b.29.1.3 24208 2wkkA 150 40.54 1jhnA 424 40.60 b.104.1.1,b.29.1.12 66722,70060 1d1rA 116 40.93 d.64.1.1 39548 1eo1A 124 41.81 c.55.5.1 33739 3gm8A 801 42.57 1daaA 282 43.58 e.17.1.1 43270 3daaA 277 44.10 e.17.1.1 43272 2j8gA 339 44.91 b.109.1.1,c.1.8.8 147915,147916 1edgA 380 45.25 c.1.8.3 28807 1w6nA 134 45.95 b.29.1.3 114275 1ceeB 59 46.72 2j2zB 173 47.22 b.2.3.2 145642 2ac1A 541 47.24 1pk6C 129 52.14 b.22.1.1 94803 1h8gA 95 52.43 b.109.1.1 65735 2jxxA 97 53.07 1c1lA 136 53.35 b.29.1.3 24219 3ikwA 374 53.83 2fpoA 202 54.44 c.66.1.46 133909 2iayA 114 54.81 d.376.1.1 147592 2a9gA 418 55.66 d.126.1.4 126435 1kmtA 141 56.42 b.1.18.8 77442 3butA 136 57.27 3bikB 134 58.18 b.1.1.1 155309 3kxwA 590 58.35 2vw2A 697 58.97 1fsoA 139 58.97 b.1.18.8 60007 1ggxA 223 60.27 d.22.1.1 38367 2or0A 414 66.82 2dfuA 264 66.93 3duiA 135 67.61 2cl2A 298 68.19 1o1yA 239 68.34 c.23.16.1 86554 1k4nA 192 70.45 d.32.1.5 72059 3dgtA 280 70.68 2cu3A 64 71.04 d.15.3.2 146428 2pifA 276 71.69 d.382.1.1 149509 1g1kA 143 71.69 b.2.2.2 22404 1uisA 231 71.91 d.22.1.1 99431 1uuzA 137 72.31 d.233.1.1 100024 1ca1 370 72.96 3a2bA 398 75.06 1danU 121 75.09 b.1.2.1 21954 3b4tA 262 75.30 3kljA 385 75.95 3m9vA 439 76.09 2q3qA 122 76.97 d.129.3.1 139799 1klfB 279 78.19 b.2.3.2,b.2.3.2 72684,72685 2c1sA 126 78.95 2eiyA 308 79.13 1ktzB 122 79.83 g.7.1.3 68868 1pdkB 157 80.86 b.2.3.2 22427 2wj7A 94 81.39 2r55A 231 81.41 1wrvA 308 81.90 3luuA 101 82.53 1m9zA 111 82.64 g.7.1.3 78881 2r31A 239 83.24 d.381.1.1 151546 2p14A 192 84.59 1xh3A 276 84.60 b.1.1.2,d.19.1.1 115287,115288 1jh3A 107 85.48 d.66.1.4 71661 1nu5A 370 86.65 c.1.11.2,d.54.1.1 92183,92184 2vm8A 501 89.94