# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3h3lA 241 1.07e-20 3hbkA 245 8.62e-20 3immA 201 5.88e-18 1gbg 214 0.08463 1oq1A 223 0.1567 b.29.1.17 93408 1upsA 420 0.2004 b.29.1.2,b.42.2.3 113394,113395 2ayh 214 0.3044 1gbgA 214 0.3191 b.29.1.2 24171 2uwaA 274 0.6429 1dypA 271 0.6865 b.29.1.2 24185 2v73A 191 0.7347 3gneA 252 1.012 2hykA 245 1.108 1uaiA 224 1.174 b.29.1.18 107761 1umzA 278 1.352 b.29.1.2 99639 1diwA 441 1.682 b.29.1.6,b.42.4.2 24264,25609 2ayhA 214 2.326 b.29.1.2 24172 1d0hA 469 2.400 b.29.1.6,b.42.4.2 24265,25610 3hrzA 627 2.863 1pz7A 204 3.690 b.29.1.4 95405 2zzjA 238 3.771 3b3qE 197 4.001 b.29.1.4 154813 2vy0A 264 4.264 1a8d 452 4.743 1cpnA 208 4.888 b.29.1.2 24175 2vxrA 482 5.004 1lnsA 763 5.672 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 2a6vA 226 5.887 b.29.1.13 126312 3bodA 178 6.334 3ilfA 268 7.074 1c4rA 182 7.724 b.29.1.4 24229 1kdkA 177 8.573 b.29.1.4 72351 3hr9A 241 8.953 1ajkA 214 9.580 b.29.1.2 24176 1sw2A 275 10.33 c.94.1.1 106064 3hmyA 450 11.24 1mt6A 280 12.01 b.76.2.1,b.85.7.1 79446,79447 2cwsA 237 13.41 1mucA 373 13.97 c.1.11.2,d.54.1.1 29236,38880 2r0hA 164 14.56 2ealA 148 15.79 2durA 253 17.59 1wzoA 246 18.41 1y4wA 518 18.57 b.29.1.19,b.67.2.3 116470,116471 3glaA 100 19.58 1hxnA 219 21.54 b.66.1.1 27529 2r16A 182 21.87 1kit 757 22.77 2d6mA 159 22.84 3g6mA 406 23.43 2w39A 298 23.61 1gzwA 134 24.25 b.29.1.3 90535 1gwmA 153 24.27 b.18.1.19 83348 1mwsA 646 24.36 d.17.4.5,d.175.1.1,e.3.1.1 79592,79593,79594 3dgtA 280 24.69 1uldA 150 25.08 b.29.1.3 99545 1gof 639 25.69 2h0bA 184 26.27 1ww7A 160 26.62 3ecqA 1531 27.36 1bkzA 135 27.53 b.29.1.3 24202 2f7lA 455 27.58 2oy7A 320 27.70 2jkbA 686 27.73 1b09A 206 28.22 b.29.1.5 24247 2dfuA 264 29.05 1b08A 158 29.24 d.169.1.1,h.1.1.1 42416,45423 2rfwA 430 30.65 1klfB 279 31.33 b.2.3.2,b.2.3.2 72684,72685 1xffA 240 31.69 d.153.1.1 109580 1sltA 134 32.68 b.29.1.3 24186 1pn0A 665 33.73 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 3juuA 280 35.77 3kycD 97 36.72 1a8dA 452 37.05 b.29.1.6,b.42.4.2 24262,25607 2fuqA 747 37.64 1lcl 142 38.20 1b5fA 239 38.47 b.50.1.2 26836 3i6bA 180 40.60 2nn8A 138 41.35 b.29.1.3 138392 1q1lA 401 42.22 d.258.1.1 95591 1xl4A 301 42.55 b.1.18.16,f.14.1.1 115430,115431 1i8aA 189 44.00 b.1.9.2 61951 3fv3A 339 45.17 1jqiA 388 46.16 a.29.3.1,e.6.1.1 67087,67088 2gw4B 162 46.25 1epwA 1290 46.57 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1ms9A 648 49.20 b.29.1.15,b.68.1.1 85088,85089 2odlA 373 49.38 3greA 437 49.54 1y2tA 142 50.00 b.97.1.2 116407 1sawA 225 50.04 d.177.1.1 112050 1h30A 422 50.49 b.29.1.4,b.29.1.4 76604,76605 2uyzB 79 51.87 d.15.1.1 140039 3biaX 116 52.57 3kz4C 397 53.87 3kydD 115 53.96 2jg9C 131 54.07 b.22.1.1 148047 1fgyA 127 54.69 b.55.1.1 26976 2oxgA 108 54.85 2o5hA 136 55.42 d.363.1.1 148599 1sw5A 275 55.58 c.94.1.1 106069 2a6zA 222 56.28 b.29.1.13 126319 3c9zA 258 57.83 2w8tA 427 57.95 2fcpA 723 61.19 f.4.3.3 43802 1wm3A 72 62.19 d.15.1.1 114736 2a46A 238 62.48 1amuA 563 63.80 e.23.1.1 43351 2hf0A 316 65.48 1d2sA 170 66.24 b.29.1.4 24221 1f5fA 205 66.26 b.29.1.4 24222 1sw5B 275 67.61 c.94.1.1 106070 1qu0A 191 67.73 b.29.1.4 24225 3dorA 583 68.66 2e9lA 469 68.75 1udsA 255 69.62 d.14.1.4,d.101.1.1 99219,99220 1hdkA 141 69.95 b.29.1.3 65807 2qtkA 390 70.13 3gqtA 399 70.55 2q3uA 383 70.73 d.126.1.6 139809 2ofcA 142 71.59 2pnqA 467 71.86 1x99A 145 73.70 b.97.1.2 114978 2jd4A 383 74.76 2iafA 151 75.22 d.81.2.1 137157 1pk6C 129 75.95 b.22.1.1 94803 1pk6B 132 78.03 b.22.1.1 94802 3km5A 180 78.18 2kd2A 94 78.24 3m9vA 439 80.81 1j1tA 233 81.04 b.29.1.18 90771 2zexA 147 82.68 2iayA 114 82.91 d.376.1.1 147592 2gtiA 370 83.09 c.66.1.48,d.294.1.2 135652,135653 2jxxA 97 84.08 1c28A 135 84.53 b.22.1.1 23857 2zglA 167 84.65 1b0lA 691 85.47 c.94.1.2,c.94.1.2 35847,35848