# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3h3lA 241 7.34e-26 3hbkA 245 2.55e-25 3immA 201 1.04e-22 1gbg 214 0.03151 1dypA 271 0.03767 b.29.1.2 24185 1a8d 452 0.07002 2v73A 191 0.1376 2ayh 214 0.2309 2hykA 245 0.2382 3gneA 252 0.2640 1upsA 420 0.3039 b.29.1.2,b.42.2.3 113394,113395 1gbgA 214 0.4421 b.29.1.2 24171 1d0hA 469 0.4501 b.29.1.6,b.42.4.2 24265,25610 1epwA 1290 0.4988 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1diwA 441 0.5931 b.29.1.6,b.42.4.2 24264,25609 1umzA 278 0.8373 b.29.1.2 99639 2vxrA 482 0.8424 1oq1A 223 1.096 b.29.1.17 93408 2uwaA 274 1.963 1c4rA 182 2.101 b.29.1.4 24229 2vy0A 264 2.220 1pz7A 204 2.273 b.29.1.4 95405 2ayhA 214 2.304 b.29.1.2 24172 1uaiA 224 2.541 b.29.1.18 107761 3hmyA 450 2.826 3bodA 178 3.623 3ecqA 1531 4.056 3ilfA 268 6.044 3kycD 97 6.975 1kdkA 177 7.085 b.29.1.4 72351 1cpnA 208 7.718 b.29.1.2 24175 3hr9A 241 7.890 1ajkA 214 9.429 b.29.1.2 24176 1a8dA 452 9.462 b.29.1.6,b.42.4.2 24262,25607 3juuA 280 10.42 1c28A 135 10.80 b.22.1.1 23857 1mveA 243 11.78 b.29.1.2 85140 2vu9A 444 12.09 3kydD 115 12.92 3cdzA 754 13.44 3glaA 100 13.90 1sltA 134 14.66 b.29.1.3 24186 1x99A 145 14.76 b.97.1.2 114978 1b09A 206 15.22 b.29.1.5 24247 1jhnA 424 15.73 b.104.1.1,b.29.1.12 66722,70060 1qu0A 191 16.07 b.29.1.4 24225 2durA 253 16.76 1hxnA 219 16.88 b.66.1.1 27529 1uldA 150 16.93 b.29.1.3 99545 2jg9C 131 18.13 b.22.1.1 148047 2o5hA 136 18.52 d.363.1.1 148599 2ealA 148 24.43 1wm3A 72 25.40 d.15.1.1 114736 2d6mA 159 25.40 1gwmA 153 27.30 b.18.1.19 83348 1mucA 373 27.38 c.1.11.2,d.54.1.1 29236,38880 3b3qE 197 28.06 b.29.1.4 154813 2ofcA 142 28.49 1edgA 380 30.03 c.1.8.3 28807 2uyzB 79 30.91 d.15.1.1 140039 1pk6B 132 31.02 b.22.1.1 94802 1c3hA 137 31.02 b.22.1.1 90405 2k1fA 88 33.81 1yifA 533 34.71 b.29.1.23,b.67.2.1 123283,123284 2a6zA 222 35.21 b.29.1.13 126319 1f5fA 205 35.29 b.29.1.4 24222 2jd4A 383 35.74 1ajoA 214 36.76 b.29.1.2 24179 2nn8A 138 37.34 b.29.1.3 138392 1bkzA 135 37.92 b.29.1.3 24202 1euvB 86 38.14 d.15.1.1 37598 2k8hA 110 38.39 1gmeA 151 38.46 b.15.1.1 65305 2r16A 182 38.54 1d1rA 116 39.31 d.64.1.1 39548 1fgyA 127 40.86 b.55.1.1 26976 1eo1A 124 47.73 c.55.5.1 33739 2kd2A 94 49.42 1a3k 137 50.79 2iayA 114 53.33 d.376.1.1 147592 2f7lA 455 55.63 2uy6B 163 56.55 b.2.3.2 145763 1pk6C 129 57.36 b.22.1.1 94803 1d2sA 170 58.04 b.29.1.4 24221 2cl2A 298 58.22 2r0hA 164 58.47 2h0bA 184 60.67 2w39A 298 61.60 1uuzA 137 63.44 d.233.1.1 100024 2dfuA 264 64.33 1mt6A 280 66.13 b.76.2.1,b.85.7.1 79446,79447 2jxxA 97 66.51 3enuA 114 67.87 2dg1A 333 68.02 b.68.6.1 131493 3a4rA 79 69.35 1shsA 147 69.69 b.15.1.1 23675 3dgtA 280 70.43 2or0A 414 70.84 2pifA 276 71.87 d.382.1.1 149509 1k4nA 192 71.97 d.32.1.5 72059 1o91A 178 72.46 b.22.1.1 92656 3entA 117 72.49 1ww7A 160 74.22 2b9uA 176 77.17 2a9gA 418 77.23 d.126.1.4 126435 1shaA 104 79.24 d.93.1.1 40424 1xh3A 276 83.00 b.1.1.2,d.19.1.1 115287,115288 1pls 113 84.97 1ceeB 59 85.79 1a0gA 282 89.31 e.17.1.1 43276 1sacA 204 89.47 b.29.1.5 24237 1vjhA 122 89.90 d.129.3.1 100811