# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3h3lA 241 1.50e-29 3hbkA 245 5.84e-29 3immA 201 5.77e-26 1gbg 214 0.009713 1a8d 452 0.03567 1dypA 271 0.04362 b.29.1.2 24185 3gneA 252 0.05152 2ayh 214 0.05747 2v73A 191 0.07511 2hykA 245 0.1191 1upsA 420 0.1678 b.29.1.2,b.42.2.3 113394,113395 1gbgA 214 0.3757 b.29.1.2 24171 1oq1A 223 0.3765 b.29.1.17 93408 1uaiA 224 0.3926 b.29.1.18 107761 1epwA 1290 0.3944 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1d0hA 469 0.4254 b.29.1.6,b.42.4.2 24265,25610 1umzA 278 0.4861 b.29.1.2 99639 1diwA 441 0.6079 b.29.1.6,b.42.4.2 24264,25609 2vxrA 482 0.6427 1c4rA 182 0.7272 b.29.1.4 24229 1pz7A 204 0.8960 b.29.1.4 95405 3bodA 178 0.9663 2ayhA 214 1.074 b.29.1.2 24172 3hmyA 450 1.248 2uwaA 274 1.353 2vy0A 264 1.972 3ecqA 1531 2.025 1qu0A 191 2.115 b.29.1.4 24225 1cpnA 208 2.340 b.29.1.2 24175 3hr9A 241 2.420 1ajkA 214 2.565 b.29.1.2 24176 3kycD 97 3.349 1kdkA 177 3.449 b.29.1.4 72351 1x99A 145 4.072 b.97.1.2 114978 1mveA 243 4.562 b.29.1.2 85140 1a8dA 452 5.780 b.29.1.6,b.42.4.2 24262,25607 2r16A 182 5.982 2jd4A 383 6.411 1mucA 373 6.493 c.1.11.2,d.54.1.1 29236,38880 3kydD 115 8.136 2nn8A 138 8.638 b.29.1.3 138392 3glaA 100 8.686 1sltA 134 8.768 b.29.1.3 24186 3cdzA 754 8.904 2jg9C 131 9.098 b.22.1.1 148047 1h30A 422 9.182 b.29.1.4,b.29.1.4 76604,76605 1c28A 135 10.86 b.22.1.1 23857 2uyzB 79 10.97 d.15.1.1 140039 1ajoA 214 11.04 b.29.1.2 24179 2vu9A 444 11.12 2ofcA 142 11.42 2d6mA 159 12.62 3ilfA 268 12.76 1a3k 137 12.88 3b3qE 197 13.89 b.29.1.4 154813 1gwmA 153 14.12 b.18.1.19 83348 1wm3A 72 14.19 d.15.1.1 114736 3juuA 280 14.30 1b09A 206 17.25 b.29.1.5 24247 1fgyA 127 18.32 b.55.1.1 26976 3flpA 217 20.00 2r0hA 164 20.32 2ealA 148 20.76 1d1rA 116 21.95 d.64.1.1 39548 2o5hA 136 22.11 d.363.1.1 148599 1uldA 150 23.02 b.29.1.3 99545 1euvB 86 23.29 d.15.1.1 37598 1i82A 189 23.33 b.1.9.2 61937 1f5fA 205 23.33 b.29.1.4 24222 2h0bA 184 23.54 2k8hA 110 23.70 2kd2A 94 23.76 2durA 253 26.54 1axkA 394 26.59 b.29.1.2,b.29.1.11 24181,24315 3a4rA 79 27.30 2k1fA 88 27.50 1bkzA 135 27.84 b.29.1.3 24202 2jxxA 97 28.92 1c3hA 137 29.94 b.22.1.1 90405 1gzwA 134 36.17 b.29.1.3 90535 1kjlA 146 36.18 b.29.1.3 118689 1edgA 380 36.83 c.1.8.3 28807 1ww7A 160 37.77 1eo1A 124 38.95 c.55.5.1 33739 1d2sA 170 39.80 b.29.1.4 24221 3entA 117 41.51 2erfA 209 41.53 b.29.1.4 132287 2oxgA 108 42.09 1hxnA 219 43.26 b.66.1.1 27529 1pk6B 132 44.73 b.22.1.1 94802 2dfuA 264 44.82 1pls 113 48.94 1shaA 104 50.31 d.93.1.1 40424 3kxwA 590 50.78 1u5dA 108 53.48 b.55.1.1 119536 1o1yA 239 53.90 c.23.16.1 86554 3enuA 114 55.16 1lcl 142 59.04 3luuA 101 59.89 1xh3A 276 60.58 b.1.1.2,d.19.1.1 115287,115288 1kmtA 141 62.07 b.1.18.8 77442 2a6zA 222 62.31 b.29.1.13 126319 2a9gA 418 63.18 d.126.1.4 126435 2shpA 525 63.20 c.45.1.2,d.93.1.1,d.93.1.1 32683,40533,40534 2zogA 479 63.38 2q86A 229 63.71 2f7lA 455 63.95 1nu5A 370 64.27 c.1.11.2,d.54.1.1 92183,92184 1pk6C 129 64.61 b.22.1.1 94803 3b4tA 262 66.14 1vjhA 122 67.63 d.129.3.1 100811 1iufA 144 68.16 a.4.1.7,a.4.1.7 71439,71440 1h8gA 95 68.30 b.109.1.1 65735 1a0gA 282 68.80 e.17.1.1 43276 1y2tA 142 70.02 b.97.1.2 116407 3daaA 277 71.14 e.17.1.1 43272 1ceeB 59 71.70 1daaA 282 72.04 e.17.1.1 43270 1r0mA 375 73.52 c.1.11.2,d.54.1.1 104747,104748 2gw4B 162 73.73 1gmeA 151 74.10 b.15.1.1 65305 2vvfA 269 75.85 1jhnA 424 78.70 b.104.1.1,b.29.1.12 66722,70060 1uuzA 137 80.90 d.233.1.1 100024 2bibA 547 81.30 b.109.1.1,d.157.1.8 128581,128582 1yifA 533 83.12 b.29.1.23,b.67.2.1 123283,123284 2brfA 110 84.46 b.26.1.2 128996 3ikwA 374 85.37 1sacA 204 86.35 b.29.1.5 24237 1k4nA 192 86.47 d.32.1.5 72059 3a2bA 398 86.50 2ox4A 403 87.12 1t61C 227 88.94 d.169.1.6,d.169.1.6 106533,106534 1sjdA 368 89.04 c.1.11.2,d.54.1.1 105632,105633 1ireA 204 89.47 d.149.1.1 76769 2zexA 147 89.94