# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3hbkA 245 2.25e-29 3h3lA 241 3.34e-29 3immA 201 1.13e-25 1gbg 214 0.2005 1oq1A 223 0.2182 b.29.1.17 93408 3gneA 252 0.2496 2hykA 245 0.5928 1dypA 271 1.596 b.29.1.2 24185 1uaiA 224 2.074 b.29.1.18 107761 2v73A 191 2.138 2h0bA 184 2.142 2ayh 214 2.251 1qu0A 191 2.251 b.29.1.4 24225 1gzwA 134 2.695 b.29.1.3 90535 1kdkA 177 2.739 b.29.1.4 72351 3bodA 178 4.065 2d6mA 159 4.137 1c4rA 182 4.525 b.29.1.4 24229 1upsA 420 5.922 b.29.1.2,b.42.2.3 113394,113395 1sltA 134 6.364 b.29.1.3 24186 1pz7A 204 7.960 b.29.1.4 95405 3b3qE 197 8.794 b.29.1.4 154813 2wjsA 608 9.222 2ealA 148 10.20 3ecqA 1531 10.67 1f5fA 205 11.85 b.29.1.4 24222 1i82A 189 11.92 b.1.9.2 61937 1dykA 394 12.16 b.29.1.4,b.29.1.4 24223,24224 1b09A 206 12.77 b.29.1.5 24247 2jd4A 383 13.01 2kd2A 94 13.81 1d2sA 170 13.88 b.29.1.4 24221 1ajoA 214 14.03 b.29.1.2 24179 2nn8A 138 14.06 b.29.1.3 138392 1a3k 137 15.01 2bvcA 486 17.32 d.15.9.1,d.128.1.1 129243,129244 1lcl 142 18.62 1bkzA 135 18.72 b.29.1.3 24202 1h30A 422 19.65 b.29.1.4,b.29.1.4 76604,76605 1gbgA 214 21.08 b.29.1.2 24171 1is3A 135 21.15 b.29.1.3 76773 1cpnA 208 27.67 b.29.1.2 24175 3flpA 217 28.02 1q8cA 151 28.82 a.79.1.2 96202 1hdkA 141 28.94 b.29.1.3 65807 1ajkA 214 30.48 b.29.1.2 24176 1a78A 134 32.74 b.29.1.3 24212 3hmyA 450 33.03 1hlcA 129 33.58 b.29.1.3 24208 1kjlA 146 38.73 b.29.1.3 118689 2fpoA 202 39.13 c.66.1.46 133909 3b9cA 144 40.46 2vy0A 264 42.92 3duiA 135 43.59 3lmnA 135 45.54 1yifA 533 45.55 b.29.1.23,b.67.2.1 123283,123284 1yrzA 528 46.22 b.29.1.23,b.67.2.1 123948,123949 2r0hA 164 50.95 1r44A 202 52.87 d.65.1.4 104787 1sacA 204 52.93 b.29.1.5 24237 1w6nA 134 53.41 b.29.1.3 114275 2vxrA 482 53.50 1xhhA 91 54.47 2hfkA 319 56.32 2zgiA 246 57.12 3enuA 114 58.13 2r16A 182 59.65 1htqA 477 61.48 d.15.9.1,d.128.1.1 71035,71036 2durA 253 63.81 1i8aA 189 67.36 b.1.9.2 61951 3cq9A 227 68.01 2zhnA 148 69.28 1pdkB 157 69.35 b.2.3.2 22427 2a6vA 226 70.94 b.29.1.13 126312 2bgoA 140 73.32 3dwfA 278 74.43 2ayhA 214 74.67 b.29.1.2 24172 1uxtA 501 74.69 c.82.1.1 108125 1o4yA 288 74.73 b.29.1.2 92473 3jukA 281 74.99 3entA 117 75.40 1gwmA 153 76.10 b.18.1.19 83348 3kycD 97 78.89 1clxA 347 79.69 c.1.8.3 28899 2abyA 146 80.06 2ggoA 401 80.07 3g3sA 249 81.06 1fgyA 127 82.03 b.55.1.1 26976 3ihkA 218 84.14 1umzA 278 84.68 b.29.1.2 99639 3f95A 193 87.93 2w08A 204 89.70 3kydD 115 89.89