# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3h3lA 241 1.11e-28 3hbkA 245 1.21e-28 3immA 201 8.32e-25 2hykA 245 0.05759 1dypA 271 0.08575 b.29.1.2 24185 1oq1A 223 0.08820 b.29.1.17 93408 1upsA 420 0.1306 b.29.1.2,b.42.2.3 113394,113395 3gneA 252 0.1592 1gbg 214 0.3120 2v73A 191 0.3278 1h30A 422 0.5740 b.29.1.4,b.29.1.4 76604,76605 1a8d 452 0.6040 3juuA 280 0.9688 1uaiA 224 1.286 b.29.1.18 107761 2uwaA 274 1.287 2vxrA 482 1.290 1umzA 278 1.293 b.29.1.2 99639 3hmyA 450 1.506 2ayh 214 1.861 2durA 253 1.970 1pz7A 204 2.098 b.29.1.4 95405 1d0hA 469 2.679 b.29.1.6,b.42.4.2 24265,25610 3ecqA 1531 3.525 1kdkA 177 3.618 b.29.1.4 72351 1diwA 441 3.966 b.29.1.6,b.42.4.2 24264,25609 1gbgA 214 4.755 b.29.1.2 24171 1ww7A 160 4.926 2vy0A 264 5.211 1qu0A 191 5.427 b.29.1.4 24225 1gzwA 134 5.521 b.29.1.3 90535 1c4rA 182 5.623 b.29.1.4 24229 1epwA 1290 6.236 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 2h0bA 184 6.512 3flpA 217 7.490 3dgtA 280 7.661 2jd4A 383 7.735 1a8dA 452 8.233 b.29.1.6,b.42.4.2 24262,25607 1clxA 347 8.681 c.1.8.3 28899 3b3qE 197 9.387 b.29.1.4 154813 1b09A 206 10.93 b.29.1.5 24247 3bodA 178 11.42 2d6mA 159 11.70 1cpnA 208 12.12 b.29.1.2 24175 2r0hA 164 12.29 2r16A 182 12.36 1i82A 189 14.05 b.1.9.2 61937 2a6zA 222 14.46 b.29.1.13 126319 1bkzA 135 15.19 b.29.1.3 24202 2ealA 148 15.55 1mveA 243 15.88 b.29.1.2 85140 1wm3A 72 18.17 d.15.1.1 114736 1o4yA 288 19.14 b.29.1.2 92473 2zglA 167 21.76 1ajoA 214 22.95 b.29.1.2 24179 1sltA 134 23.89 b.29.1.3 24186 2jg9C 131 25.08 b.22.1.1 148047 3bp5A 117 26.13 b.1.1.1 155462 1uxtA 501 26.83 c.82.1.1 108125 1ogaD 215 27.74 b.1.1.1,b.1.1.2 86990,86991 2kd2A 94 29.45 1yrzA 528 30.22 b.29.1.23,b.67.2.1 123948,123949 1uldA 150 30.38 b.29.1.3 99545 2fpoA 202 33.09 c.66.1.46 133909 1fsoA 139 33.21 b.1.18.8 60007 1yifA 533 33.50 b.29.1.23,b.67.2.1 123283,123284 1tcrA 202 35.05 b.1.1.1,b.1.1.2 20605,21549 1lcl 142 39.17 3kycD 97 39.40 1gwmA 153 40.89 b.18.1.19 83348 1ajkA 214 41.19 b.29.1.2 24176 1f5fA 205 42.29 b.29.1.4 24222 2nn8A 138 45.29 b.29.1.3 138392 2w08A 204 46.17 1d2sA 170 46.79 b.29.1.4 24221 3ilfA 268 48.79 2ayhA 214 49.61 b.29.1.2 24172 3entA 117 52.07 1c28A 135 52.35 b.22.1.1 23857 1kmtA 141 53.31 b.1.18.8 77442 3glaA 100 54.02 1pk6B 132 54.05 b.22.1.1 94802 3enuA 114 54.80 3hr9A 241 55.40 2a6vA 226 55.42 b.29.1.13 126312 2oizA 361 56.84 2cwsA 237 57.14 3kydD 115 58.88 1rhoA 145 59.55 b.1.18.8 21899 1a3k 137 59.57 2wjsA 608 60.04 1uuzA 137 60.63 d.233.1.1 100024 1shsA 147 61.06 b.15.1.1 23675 1hlcA 129 61.15 b.29.1.3 24208 2vw2A 697 61.85 1axkA 394 64.23 b.29.1.2,b.29.1.11 24181,24315 3bikB 134 64.44 b.1.1.1 155309 1bd2D 204 65.66 b.1.1.1,b.1.1.2 20622,21557 1fgyA 127 70.31 b.55.1.1 26976 2o5hA 136 71.60 d.363.1.1 148599 1hdkA 141 71.96 b.29.1.3 65807 3a4rA 79 72.55 2bgoA 140 75.80 3f95A 193 75.97 1kyaA 499 75.99 b.6.1.3,b.6.1.3,b.6.1.3 73203,73204,73205 1ceeB 59 76.87 2iayA 114 77.28 d.376.1.1 147592 1pdkB 157 78.76 b.2.3.2 22427 2erfA 209 82.33 b.29.1.4 132287 1euvB 86 84.82 d.15.1.1 37598 1a78A 134 85.59 b.29.1.3 24212 1y8tA 324 86.69 b.36.1.4,b.47.1.1 122763,122764